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Team:Groningen/Project/Motility
From 2013.igem.org
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| - | <h1> | + | <h1>Coating Mechanism</h1> |
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| - | + | Our initial idea was to let bacteria produce the silk in a bath and of the implant is put into the bath the implant will be coated. Because a low yield can be expected and with the recent developments of porous implants a more elegant solution is needed, because the silk has to be produced on site. Therefore the heat motility was developed. with the use of heat motility the silk will be produced on site, this will also save energy in the form of nutritions and energy of heating the bath. | |
| - | In | + | <br> |
| + | In case the silk cannot be secreted the coating will be done by a biofilm formation on the implant. (need to improve this) | ||
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| + | <h2> Heat Motility </h2> | ||
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<Br><br><br><Br><br><br> | <Br><br><br><Br><br><br> | ||
| - | < | + | <h3>Thermal control of fatty acid synthesis.</h3> |
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In order to maintain the fluidity of the cell membrane when the environmental temperature is decreasing, <i>B. subtilis</i> (among other bacteria) adapts the membrane by increasing the fraction of unsaturated phospholipids acyl chains. | In order to maintain the fluidity of the cell membrane when the environmental temperature is decreasing, <i>B. subtilis</i> (among other bacteria) adapts the membrane by increasing the fraction of unsaturated phospholipids acyl chains. | ||
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double bonds into pre-existing saturated fatty acyl chains. | double bonds into pre-existing saturated fatty acyl chains. | ||
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| - | < | + | <h4>The promoter activity of <i>des</i></h4> |
<img src="https://static.igem.org/mediawiki/2013/d/d7/Promoter-des-activity.jpg" width="50%"> | <img src="https://static.igem.org/mediawiki/2013/d/d7/Promoter-des-activity.jpg" width="50%"> | ||
<br><b>Pattern of P<i>des</i>-<i>lacZ</i> expression on a temperature downshift.</b>(a) <i>B. subtilis</i> AKP3 cells were grown at 37 °C to an optical density of 0.4 at 525 nm and then divided into two fractions. The first was transferred to 25 °C (●) and the second was kept at 37 °C (○). (b) Pattern of P<i>des</i>-<i>lacZ</i> expression in a <i>des</i>‾ background. <i>B. subtilis</i> AKP4 cells were grown at 37 °C to an optical density of 0.4 at 525 nm and then divided into two fractions. One fraction was transferred to 25 °C (●) while the other was kept at 37 °C (○). (c). Effect of exogenous fatty acids on P<i>des</i>-<i>lacZ</i> expression pattern. <i>B. subtilis</i> AKP4 cells were grown at 37 °C to an optical | <br><b>Pattern of P<i>des</i>-<i>lacZ</i> expression on a temperature downshift.</b>(a) <i>B. subtilis</i> AKP3 cells were grown at 37 °C to an optical density of 0.4 at 525 nm and then divided into two fractions. The first was transferred to 25 °C (●) and the second was kept at 37 °C (○). (b) Pattern of P<i>des</i>-<i>lacZ</i> expression in a <i>des</i>‾ background. <i>B. subtilis</i> AKP4 cells were grown at 37 °C to an optical density of 0.4 at 525 nm and then divided into two fractions. One fraction was transferred to 25 °C (●) while the other was kept at 37 °C (○). (c). Effect of exogenous fatty acids on P<i>des</i>-<i>lacZ</i> expression pattern. <i>B. subtilis</i> AKP4 cells were grown at 37 °C to an optical | ||
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| - | < | + | <h3>Motility</h3> |
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Bacterial movement is based on flagella (tail like structures) and utilizes a counter-clockwise (CWW) | Bacterial movement is based on flagella (tail like structures) and utilizes a counter-clockwise (CWW) | ||
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<Br><br><br><Br><br><br><Br><br><br> | <Br><br><br><Br><br><br><Br><br><br> | ||
| - | < | + | <h3>The principle</h3> |
CheY is a mayor factor in spinning the flagella CCW. When <i>cheY</i> is absent, cells are significant less motile[ref]. Because the promoter of <i>des</i> is active at low temperatures (25 °C) we placed <i>cheY</i> under control of the promoter of <i>des</i> (figure 2). | CheY is a mayor factor in spinning the flagella CCW. When <i>cheY</i> is absent, cells are significant less motile[ref]. Because the promoter of <i>des</i> is active at low temperatures (25 °C) we placed <i>cheY</i> under control of the promoter of <i>des</i> (figure 2). | ||
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| + | <h2> Biofilm</h2> | ||
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| + | (..) | ||
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<h3>References</h3> | <h3>References</h3> | ||
Revision as of 11:28, 10 September 2013
Coating Mechanism
Our initial idea was to let bacteria produce the silk in a bath and of the implant is put into the bath the implant will be coated. Because a low yield can be expected and with the recent developments of porous implants a more elegant solution is needed, because the silk has to be produced on site. Therefore the heat motility was developed. with the use of heat motility the silk will be produced on site, this will also save energy in the form of nutritions and energy of heating the bath.
In case the silk cannot be secreted the coating will be done by a biofilm formation on the implant. (need to improve this)
Heat Motility
Thermal control of fatty acid synthesis.
In order to maintain the fluidity of the cell membrane when the environmental temperature is decreasing, B. subtilis (among other bacteria) adapts the membrane by increasing the fraction of unsaturated phospholipids acyl chains.
The desaturation of the membrane starts with the membrane protein, DesK. DesK senses temperature of its environment and when the temperature is <30 °C, DesK autophosphorylates its conserved histidine. Sequentially the phosphoryl group is transferred to the aspartate residue in desR that activates the promoter of des. The gene des is translated into a fatty acid desaturase (Δ5-Des), that changes the fluidity of the membrane by introducing
double bonds into pre-existing saturated fatty acyl chains.
The promoter activity of des
Pattern of Pdes-lacZ expression on a temperature downshift.(a) B. subtilis AKP3 cells were grown at 37 °C to an optical density of 0.4 at 525 nm and then divided into two fractions. The first was transferred to 25 °C (●) and the second was kept at 37 °C (○). (b) Pattern of Pdes-lacZ expression in a des‾ background. B. subtilis AKP4 cells were grown at 37 °C to an optical density of 0.4 at 525 nm and then divided into two fractions. One fraction was transferred to 25 °C (●) while the other was kept at 37 °C (○). (c). Effect of exogenous fatty acids on Pdes-lacZ expression pattern. B. subtilis AKP4 cells were grown at 37 °C to an optical density of 0.4 at 525 nm and then divided into two fractions. Each fraction was supplemented with palmitic (●) or oleic acid (■) and growth was continued at 25 °C. (d) Effect of desKR disruption on Pdes-lacZ expression. B. subtilis AKP21 cells were grown at 37 °C to an optical density of 0.4 at 525 nm and then divided into two fractions. One of the fractions was transferred to 25 °C (●) and the other one was kept at 37 °C (○). Optical density at 525 nm (inserts) and β-galactosidase specific activity were determined at the indicated times (a, b, c, or d).
| Strain | Description |
|---|---|
| JH642 | trpC2 pheA1 |
| AKP3 | JH642 amyE::[Pdes(-2269 to +31)lacZ] |
| AKP4 | AKP3 des::kan |
| AKP21 | AKP3 desKR::kan |
Bredeston et al. 2011
Motility
Bacterial movement is based on flagella (tail like structures) and utilizes a counter-clockwise (CWW) and clockwise (CW) motion. When the flagella turn CCW they gather in one area resulting in bacteria that move straight. When the flagella move CW they disperse all over the cell membrane, resulting in the bacteria tumbling in random directions. When bacteria sense an attractant the flagellar motion will turn CCW, when the concentration of the attractant reduces the flagella will turn CW.
The receptor is displayed in the figure on the page below. The letters are all Che proteins, with this
cascade of proteins motility is coordinated. When a attractant is bound to the receptor, CheA
phosphorylizes CheY into CheY-P. CheY-P causes the CCW motility in the flagella, it also causes
(by forming a CheY-p/CheC complex) that CheD is pulled off the receptor. CheD and CheC forms
also a complex which dephosphorylizes CheY-p into CheY thus resetting the receptor.
The principle
CheY is a mayor factor in spinning the flagella CCW. When cheY is absent, cells are significant less motile[ref]. Because the promoter of des is active at low temperatures (25 °C) we placed cheY under control of the promoter of des (figure 2).
Biofilm
(..)References
Mariana Martin and Diego de Mendoza , Regulation of Bacillus subtilis DesK thermosensor by lipids, Biochemical Journal (2013), Vol 451 No 2, pp. 269–275
Christopher V. Rao, George D. Glekas and George W. Ordal, The three adaptation systems of Bacillus subtilis chemotaxis, Trends in Biology (2008), Vol. 16 No 10, pp. 480-487.
Liam F. Garrity and George W. Ordal, Chemotaxis in Bacillus Subtilis: How bacteria monitor environmental signals, Pharmacology and Therepeutics (1995), Vol. 68 No.1, pp. 87-104.
