Template:Kyoto/Notebook/Aug 19

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(Created page with "==Aug 19== ===Colony PCR=== <div class="experiment"> <span class="author">Kojima</span> {| class="wikitable" !|Sample||base pair |- |8/18 J23100 control -(1)||1142 |- |8/18 J2310...")
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<span class="author">Murata and Kojima</span>
<span class="author">Murata and Kojima</span>
{| class="wikitable"
{| class="wikitable"
-
!Name||Well||Sample||Competent Cells||Plate
+
!Name||Sample||Competent Cells||Plate
|-
|-
-
|8/18 Plux+RBS-GFP-DT||--||2&micro;L||20&micro;L||CP
+
|8/18 Plux+RBS-GFP-DT||2&micro;L||20&micro;L||CP
|-
|-
-
|8/18 Plux(NC)||--||2&micro;L||20&micro;L||CP
+
|8/18 Plux(NC)||2&micro;L||20&micro;L||CP
|-
|-
-
|8/19 RBS+lysis2 ||--|| 2&micro;L||20&micro;L||Amp
+
|8/19 RBS+lysis2|| 2&micro;L||20&micro;L||Amp
|-
|-
-
|8/15 Pbad-araC||Plate5-14N||2&micro;L||20&micro;L||Kan
+
|8/15 Pbad-araC||2&micro;L||20&micro;L||Kan
|}
|}
</div>
</div>

Revision as of 06:12, 19 September 2013

Contents

Aug 19

Colony PCR

Kojima

Samplebase pair
8/18 J23100 control -(1)1142
8/18 J23100-RBS-GFP-DT -(1)1156
8/18 J23100-RBS-GFP-DT -(2)1156
8/18 J23100-RBS-luxR-DT -(1)1271
8/18 J23100-RBS-luxR-DT -(2)1271
8/18 J23100-RBS-lacZα-DT -(1)670
8/18 J23100-RBS-lacZα-DT -(2)670
8/18 RBS-lysis3 -(1)997
8/18 RBS-lysis3 -(2)997
8/18 P0440(RBS-tetR-DT) -(1)1154
8/18 P0440(RBS-tetR-DT) -(2)1154
negative control--
PreDenatureDenatureAnnealingExtensioncycle
94°C94°C55°C68°C--
5min30s30s1min30cycles

File:Igku Aug19electrophoresis1.png

Samplebase pair
8/18 RBS control -(1)--
8/18 R0040(Ptet) -(1)686
8/18 R0040(Ptet) -(2)686
negative control--
PreDenatureDenatureAnnealingExtensioncycle
94°C94°C55°C68°C--
5min30s30s30s30cycles

File:Igku Aug19electrophoresis2.png

Gel Extraction

Ashida

LaneDNAEnzyme
1100bp ladder--
38/18 K117000(lysis2) -1XbaI & PstI
58/18 K117000(lysis2) -1XbaI & PstI

File:Igku Aug19electrophoresis3
File:Igku Aug19electrophoresis4

Nameconcentration[µg/mL]260/280260/230
8/18 lysis2-1(XbaI & PstI)3.13.640.19
8/18 lysis2-1(XbaI & PstI)3.41.890.13

LB Medium Plate

Nakamoto

volume200ml
Bacto T2ypton 2g
Bacto yeast extract 1g
NaCl1g
Agar Pouder2g　

Restriction Enzyme Digestion

Tatsui

lysis2-1XbaIPstIBSA10xbufferMilliQtotal
10µL1µL1µL3µL3µL12µL30µL
2µL0.2µL--1µL1µL5.8µL10µL
2µL--0.2µL1µL1µL5.8µL10µL
2µLL----1µL1µ6µL10µL
  • at 37°C, for 1h

Murata and Okazaki

8/19 lysis1-110xbufferXbaIPstIBSAMilliQtotal
2µL2µL0.5µL0.8µL2µL13µL20µL
0.5µL1µL0.2µL--1µL7.3µL10µL
0.5µL1µL--0.2µL1µL7.3µL10µL
0.5µL1µL----1µL7.5µL10µL
  • at 37°C, for 1h

Ligation

No name

Name NC
RBS0.30.3
lysis27.4--
MilliQ--7.4

Electrophoresis

No name

LaneSampleEnzyme1Enzyme2
1100bp ladder----
28/19 lysis1XbaIPstI
38/19 lysis1XbaI--
48/19 lysis1--PstI
58/19 lysis1----
68/19 lysis1(Gel Extraction Product)XbaIPstI

Transformation

Murata and Kojima

NameSampleCompetent CellsPlate
8/18 Plux+RBS-GFP-DT2µL20µLCP
8/18 Plux(NC)2µL20µLCP
8/19 RBS+lysis2 2µL20µLAmp
8/15 Pbad-araC2µL20µLKan
  • Incubate at 37°C

Gel Extraction

No name

LaneDNAEnzyme
1100bp ladder--
28/19 lysis1 ①XbaI & PstI

[fig before] [fig after]

Nameconcentration[µg/mL]260/280260/230
8/19 lysis1 ①(XbaI & PstI)87.81.060.82

Liquid Culture

Ashida

Samplemedium
8/18 Ptet -1Plusgrow medium(+CP)
8/18 Ptet -2Plusgrow medium(+CP)
8/18 RBS-tetR-DT -1Plusgrow medium(+CP)　
8/18 RBS-tetR-DT -2Plusgrow medium(+CP)　
8/18 J23100-GFP -1Plusgrow medium(+Amp)
8/18 J23100-luxR -1Plusgrow medium(+Amp)
8/18 J23100-luxR -2Plusgrow medium(+Amp)
8/18 J23100-lacZα -1Plusgrow medium(+Amp)
8/18 RBS-lysis3 -1Plusgrow medium(+Amp)
8/18 RBS-lysis3 -2Plusgrow medium(+Amp)

Master Plate

Ashida

NumberUse LB plate(+Amp)
18/18 J23100-GFP -1
28/18 J23100-luxR -1
38/18 J23100-luxR -2
48/18 J23100-lacZα -1
58/18 RBS-lysis3 -1
68/18 RBS-lysis3 -2
NumberUse LB plate(+CP)
18/18 Ptet -1
18/18 Ptet -2
38/18 RBS-tetR-DT -1
48/18 RBS-tetR-DT -2
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