Team:Hong Kong HKUST/notebook/mod3

From 2013.igem.org

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       <a href='#' class='head'>Week 5</a>
       <a href='#' class='head'>Week 5</a>
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       <div class='content' align="left">Content 1
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       <div class='content' align="left">
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<p>&nbsp;</p>
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<p><strong>29-7-2013</strong><br />
 +
  Repeat digestion of pSB1C3.MLS(25) with EcoRI and SpeI, gel check and Sanger sequence<br />
 +
  Spread plate of GFP(25) transformed colonies</p>
 +
<p>&nbsp;</p>
 +
<p><strong>30-7-2013</strong><br />
 +
  pSB1C3.MLS (25) digestion with EcoRI and SpeI<br />
 +
  Gel electrophoresis of digested pSB1C3.MLS product<br />
 +
  Streak plate for pSB1C3.MLS colony 1,2, and 3<br />
 +
  Sanger sequencing of pSB1C3.MLS<br />
 +
Streak plate of EGFP(25) colonies</p>
 +
<p>&nbsp;</p>
 +
<p><strong>31-7-2013</strong><br />
 +
  pSB1C3.MLS (25) Sanger sequence(Cont.)<br />
 +
GFP (25) inoculation</p>
 +
<p>&nbsp;</p>
 +
<p><strong>01-08-2013</strong><br />
 +
  GFP(25) plasmid extraction<br />
 +
  Prepare the glycerol stock and stored it<br />
 +
Digestion of GFP(25) with EcoRI and SpeI, gel electrophoresis</p>
 +
<p>&nbsp;</p>
 +
<p><strong>02-08-2013</strong><br />
 +
  GFP (25) plasmid extraction<br />
 +
  Digestion of GFP(25) with EcoRI and SpeI, gel electrophoresis<br />
 +
Inoculate BBa_J176171 using Amp LB, and BBa_K404108 using CAM LB</p>
 +
<p>&nbsp;</p>
       </div>
       </div>
   </div>
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Revision as of 18:48, 19 September 2013








June 2013

Week 4

 

24-6-2013
Inoculation of pcmv/myc/mito

 

25-6-2013
Plasmid extraction for pcmv/myc/mito
Digestion of pcmv plasmid extraction product with PstI-HF and NotI-HF
Gel electrophoresis of pcmv digested product
Gel check for pcmv digestion product

 

26-6-2013
Gel purification of pcmv gel product
Gel check of pcmv gel purified product
PCR clone MLS from pcmv/myc/mito
Transformation of pEGFP-N1 with SURE

 

27-6-2013
Gel check for the MLS PCR product and PCR Clean Up
Digestion of MLS clean up product with EcoRI & PstI-HF
Inoculation of pEGFP-N1

 

28-6-2013
PCR Clean up of digested MLS
Plasmid Extraction of pEGFP-N1
Digestion of pEGFP-N1 with PstI-HF  & NotI-HF

 

July 2013

Week 1

 

02-07-2013
Gel Check of pEGFP-N1 plasmid extraction product to confirm presence of DNA
Digestion of pEGFP-N1 (with NotI-HF and PstI-HF) 2nd EGFP product:repeat digestion
Inoculation of pEGFP-N1 3rd EGFP: repeat Inoculation
Get pSB1C3.J04450 plasmid extraction product from Bida
Digestion of pSB1C3 with EcoRI and PstI-HF

 

03-07-2013
Gel electrophoresis of digested EGFP (2nd)
Plasmid extraction of pEGFP-N1 (3rd)
Digetion of pEGFP-N1 (3rd) using NotI-HF and PstI-HF
Ligation of MLS with pSB1C3
Transformation of ligated pSB1C3-MLS

 

04-07-2013
Gel purification of pEGFP-N1 (2nd) (cont.)
Gel analysis and gel electrophoresis of pEGFP-N1 (3rd)
Run gel for remaining 3rd EGFP (digested)
Ethanol precipitation of pEGFP-N1 (4th) (using remaining 3rd EGFP plasmid)
Digestion of pEGFP-N1 (4th) and gel electrophoresis
Transformation of pEGFP-N1 into DH10B
Colony PCR of MLS biobrick and gel electrophoresis
Inoculation of MLS colony no.2 & spread the remaining re-suspend colony 2 on CAM plate

 

05-07-2013
pEGFP-N1 troubleshoot
Digestion by PstI-HF, NotI-HF, PstI-HF +NotI-HF and gel check
Inoculate EGFP from transformed new competent cell
Plasmid extraction of MLS Biobrick
Sanger sequencing of MLS

 

Week 2

 

08-07-2013
Result of MLS Sanger sequencing showed that DNA is not enough, the sequencing failed
Inoculation of MLS.PSB1C3
Plasmid extraction of pEGFP-N1
Digestion of pEGFP-N1 with NotI-HF & PstI-HF
Run gel, and it turned out that NotI-HF did not work

 

09-07-2013
Plasmid extraction of MLS biobrick
Digestion check on MLS.pSB1C3 product with EcoRI & PstI
Sanger sequencing of MLS biobrick
pEGFP-N1 digestion with PstI & NotI

 

10-07-2013
pcmv.myc.mito & pEGFP-N1 ligation, and transform into SURE on AMP plate
MLS biobrick Sanger sequencing result showed there is no pellet, repeat Sanger sequencing
Run gel for digestion check of MLS.psb1c3 with EcoRI & PstI

 

11-07-2013
Inoculation of pcmv.myc.mito.EGFP
MLS biobrick Sanger sequencing (Cont.)

 

12-07-2013
Plasmid extraction of pcmv/myc/mito.EGFP
pcmv/myc/mito.EGFP transformation check by digesting with PstI & NotI

Spread plate for confirmed colony

 

Week 3

 

15/7/2013
pcmv/myc/mito.GFP inoculation

 

16/7/2013
Plasmid Extraction of pcmv/myc/mito.GFP
Nanodrop: concentration is not high enough, will repeat inoculation

 

17-7-2013
Inoculate 4 tubes of pcmv/myc/mito.GFP

 

18-7-2013
pcmv/myc/mito.GFP plasmid extraction
PCR clone MLS (RFC25)

 

19-7-2013
Run gel for MLS(25) PCR product, PCR clean up
Digestion of the MLS PCR product using EcoRI and PstI, gel check
Digestion of pSB1C3 with EcoRI & PstI, run gel

 

Week 4

 

22-7-2013
Gel purification of pSB1C3
Gel check of pSB1C3: band is too pale, repeat inoculation
Inoculation of pSB1C3.J04450
Repeat PCR of MLS(25)
Gel check of PCR product and PCR clean up
Digestion of MLS(25) with EcoRI & SpeI, run gel

 

23-7-2013
MLS(25) Gel purification (Cont), and gel check
pSB1C3 plasmid extraction
Digestion of pSB1C3 with EcoRI & SpeI

 

24-7-2013
pSB1C3 Gel purification (Cont.)
MLS(25) & pSB1C3 ligation, and transform to CAM plate

 

25-7-2013
Colony PCR of MLS.pSB1c3(25)
Inoculation of MLS.pSB1c3(25)

 

26-7-2013
Plasmid extraction of MLS.pSB1c3(25)
Digestion of ligated MLS-pSB1C3 with EcoRI & SpeI, gel check
Gel check for MLS.pSB1c3(25) colony PCR product
Spread the remaining re-suspend of correct colony on CAM plate

 

Week 5

 

29-7-2013
Repeat digestion of pSB1C3.MLS(25) with EcoRI and SpeI, gel check and Sanger sequence
Spread plate of GFP(25) transformed colonies

 

30-7-2013
pSB1C3.MLS (25) digestion with EcoRI and SpeI
Gel electrophoresis of digested pSB1C3.MLS product
Streak plate for pSB1C3.MLS colony 1,2, and 3
Sanger sequencing of pSB1C3.MLS
Streak plate of EGFP(25) colonies

 

31-7-2013
pSB1C3.MLS (25) Sanger sequence(Cont.)
GFP (25) inoculation

 

01-08-2013
GFP(25) plasmid extraction
Prepare the glycerol stock and stored it
Digestion of GFP(25) with EcoRI and SpeI, gel electrophoresis

 

02-08-2013
GFP (25) plasmid extraction
Digestion of GFP(25) with EcoRI and SpeI, gel electrophoresis
Inoculate BBa_J176171 using Amp LB, and BBa_K404108 using CAM LB

 

August 2013

Week 1
Week 2
Content 1
Week 3
Content 1
Week 4
Content 1

September 2013

Week 1
Content 1
Week 2
Content 1
Week 3
Content 1
Week 4
Content 1
Week 5
Content 1