Template:Kyoto/Notebook/Aug 28

From 2013.igem.org

(Difference between revisions)
(→Aug 28)
(→Ligation)
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|experiment||8/27 DT (EcoRI & XbaI)||2.9||8/28 RBS-lysis1 (EcoRI & SpeI)||9.5
|experiment||8/27 DT (EcoRI & XbaI)||2.9||8/28 RBS-lysis1 (EcoRI & SpeI)||9.5
|-
|-
-
|experiment||8/28 Plux (SpeI & PstI)||2.3||8/28 RBS-GFP-DT (XbaI & PstI)||
+
|experiment||8/28 Plux (SpeI & PstI)||2.3||8/28 RBS-GFP-DT (XbaI & PstI)||18
|-
|-
-
|experiment||8/28 Pcon-RBS-luxR-DT (EcoRI&XbaI)||3.3||8/28 Pcon^RBS-GFP-DT-(1) (EcoRI&SpeI)||28
+
|experiment||8/28 Pcon-RBS-luxR-DT (EcoRI & XbaI)||3.3||8/28 Pcon^RBS-GFP-DT-(1) (EcoRI&SpeI)||28
|-
|-
-
|8/27 DT (EcoRI&XbaI)||2.7||8/24 Spinach (EcoRI&SpeI)||2.4
+
|experiment||8/27 DT (EcoRI & XbaI)||2.7||8/24 Spinach (EcoRI&SpeI)||2.4
|}
|}
*Samples were evaporeted used evaporator into about 1 µL.
*Samples were evaporeted used evaporator into about 1 µL.

Revision as of 12:45, 21 September 2013

Contents

Aug 28

Electrophoresis

No name

LaneSample
1100bp
2SasA
3RpaA
4RpaB
5PkaiBC
6PCR NC
7100bp

File:Igku xxxxxx.xxx

Miniprep

No name

DNAconcentration[µg/mL]260/280260/230
8/27 Plux173.81.951.45

Ligation

No name

stateVectorInserter
experiment8/17 DT-13.08.0
  • Samples were evaporeted used evaporator into about 3 µL.
sampleMilliQLigation Hightotal
343.510.5
  • incubate one hour at 16 °C

Gel Extraction

No name

LaneDNA
1100bpladder
3SasA(8/27 Genome PCR production)
5RpaA(8/27 Genome PCR production)
7RpaB(8/27 Genome PCR production)
9PkaiBC(8/27 Genome PCR production)

File:Igku xxbeforexx.xxx
File:Igku xxafterxx.xxx

Colony PCR

No name

Samplebase pair
8/21 RBS-lysis2-(3)772
8/21 RBS-lysis2-(4)772
8/21 RBS-lysis2-(5)772
8/21 RBS-lysis2-(6)772
PreDenatureDenatureAnnealingExtensioncycle
94°C94°C55°C68°C--
5min30s30s48s30cycles

File:Igku Aug19electrophoresis1.png

Restriction Enzyme Digestion

No name

8/22 RBS-lysis1-(1)EcoRISpeIBufferBBSAMilliQtotal
2 cuts9µL0.5µL0.5µL3µL0.3µL16.7µL30µL
NC1µL0µL0µL1µL0.1µL7.9µL10µL
8/17 RBS-GFP-DT-(2)XbaIPstIBufferDBSAMilliQtotal
2 cuts4µL0.5µL0.5µL3µL0.3µL21.7µL30µL
NC0.5µL0µL0µL1µL0.1µL8.4µL10µL
8/20 Pcon-RBS-GFP-DT-(1)EcoRISpeIBufferBBSAMilliQtotal
2 cuts3µL0.5µL0.5µL3µL0.3µL22.7µL30µL
NC0.3µL0µL0µL1µL0.1µL8.6µL10µL
8/20 Pcon-RBS-luxR-DT-(1)EcoRIXbaIBufferDBSAMilliQtotal
2 cuts2µL0.5µL0.5µL3µL0.3µL23.7µL30µL
NC0.3µL0µL0µL1µL0.1µL8.6µL10µL

No name

8/28 PluxSpeIPstIBufferDBSAMilliQtotal
2 cuts6µL0.5µL0.5µL3µL0.3µL19.7µL30µL
NC1µL0µL0µL1µL0.1µL7.9µL10µL
8/20 RBS-tetR-DT-(1)XbaIPstIBufferDBSAMilliQtotal
2 cuts5µL0.5µL0.5µL3µL0.3µL20.7µL30µL
NC0.5µL0µL0µL1µL0.1µL8.4µL10µL
  • incubated 37°C 1hour

Electrophoresis

No name

LaneSampleEnzyme1Enzyme2
18/22 RBS-lysis1-(1)EcoRISpeI
28/22 RBS-lysis1-(1)----
38/17 RBS-GFP-DT-(2)XbaIPstI
48/17 RBS-GFP-DT-(2)----
58/20 Pcon-RBS-GFP-DT-(1)EcoRIXbaI
68/20 Pcon-RBS-GFP-DT-(1)----
7100bp ladder----
88/20 Pcon-RBS-luxR-DT-(1)EcoRIXbaI
98/20 Pcon-RBS-luxR-DT-(1)----
108/28 PluxSpeIPstI
118/28 Plux----
128/20 RBS-tetR-DTXbaIPstI
138/20 RBS-tetR-DT----

File:Igku Aug28electrophoresis1

Gel Extraction

No name

LaneDNAEnzyme
1100bp ladder--
28/20 RBS-lysis1-(1)EcoRI & SpeI
3
4----
58/28 RBS-GFP-DT-(2)XbaI & PstI
6

File:Igku xxbeforexx.xxx
File:Igku xxafterxx.xxx

LaneDNAEnzyme
1100bp ladder--
28/28 PluxSpeI & PstI
3
4----
58/20 RBS-tetR-DT-(1)XbaI & PstI
6

File:Igku xxbeforexx.xxx
File:Igku xxafterxx.xxx

Nameconcentration[µg/mL]260/280260/230
Pcon-RBS-GFP-DT (EcoRI&SpeI)7.11.880.07
Pcon-RBS-luxR-DT (EcoRI&XbaI)15.31.930.70
Plux (SpeI&PstI)4.51.790.31
RBS-GFP-DT (XbaI&PstI)6.02.160.03
RBS-tetR-DT (XbaI&PstI)7.61.910.38

Colony PCR

No name

Samplebase pair
8/27 pT181 attenuator-DT-1738
8/27 pT181 attenuator-DT-2738
8/27 pT181 attenuator-DT-3738
8/27 TetR-aptamer 12_1R-DT-1521
8/27 TetR-aptamer 12_1R-DT-2521
8/27 pT181 antisense-DT-1542
PreDenatureDenatureAnnealingExtensioncycle
94°C94°C55°C68°C--
5min30s30s30s30cycles

File:Igku Aug28electrophoresis3?.png

Samplebase pair
8/27 Pλ-luxI-1???
8/27 Pλ-luxI???
PreDenatureDenatureAnnealingExtensioncycle
94°C94°C55°C68°C--
5min30s30s30min3cycles

File:Igku Aug19electrophoresis1.png

Colony PCR

No name

Samplebase pair
8/21 RBS-lysis2-9772
8/21 RBS-lysis2-10772
8/21 RBS-lysis2-11772
8/21 RBS-lysis2-12772
8/21 RBS-lysis2-13772
8/21 RBS-lysis2-14772
PreDenatureDenatureAnnealingExtensioncycle
94°C94°C55°C68°C--
5min30s30s48s30cycles

File:Igku Aug28electrophoresis4?.png

Liquid Culture

No name

Samplemedium
8/16 Master Plate(CP)-6 DTPlusgrow medium(+CP)
J23100 Master Plate-1Plusgrow medium(+Amp)
Plac Master Plate-1Plusgrow medium(+CP)　

Ligation

No name

stateVectorInserter
experiment8/27 DT (EcoRI & XbaI)2.98/28 RBS-lysis1 (EcoRI & SpeI)9.5
experiment8/28 Plux (SpeI & PstI)2.38/28 RBS-GFP-DT (XbaI & PstI)18
experiment8/28 Pcon-RBS-luxR-DT (EcoRI & XbaI)3.38/28 Pcon^RBS-GFP-DT-(1) (EcoRI&SpeI)28
experiment8/27 DT (EcoRI & XbaI)2.78/24 Spinach (EcoRI&SpeI)2.4
  • Samples were evaporeted used evaporator into about 1 µL.
sampleMilliQLigation Hightotal
1349
  • incubate overnight at 4 °C

Liquid Culture

No name

Samplemedium
8/26 Pλ-RBS-luxI-DT-1Plusgrow medium (+Amp)
8/26 Pλ-RBS-luxI-DT-2Plusgrow medium (+Amp)　
  • incubate 37°C 10hour
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