Template:Kyoto/Notebook/Sep 10
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==Sep 10== | ==Sep 10== | ||
+ | ===Ligation=== | ||
+ | |||
+ | <!-- こっから --> | ||
+ | <div class="experiment"> | ||
+ | <span class="author">Nakamoto</span> | ||
+ | {| class="wikitable" | ||
+ | !state||colspan="2"|Vector||colspan="2"|Inserter||Ligation High ver.2 | ||
+ | |- | ||
+ | |experiment||9/6 Pcon-RBS-luxR-DT||1.9µL||9/6Plux-RBS-GFP-DT||22 µL|| µL | ||
+ | |- | ||
+ | |experiment||9/6 Plux||2µL||9/8 RBS-lysis1-DT||6.6µL||xx µL | ||
+ | |- | ||
+ | |experiment||9/6 Plux||2µL||9/8 RBS-lysis2-DT||6.3µL||xx µL | ||
+ | |- | ||
+ | |experiment||9/8 Ptet-PT181 antisense||1.6µL||9/8 spinach-DT||4.4µL||xx µL | ||
+ | |- | ||
+ | |experiment||9/8 Pcon-PT181 attenuator||3.4µL||9/8 apz 12-1R-PT||2.1µL||xx µL | ||
+ | |- | ||
+ | |experiment||9/8 Pcon||3.4µL||9/8 apz 12-1R-PT||2.3µL||xx µL | ||
+ | |- | ||
+ | |experiment||9/8 DT||3.0µL||9/8 Pcon-PT181 attenuator||7.9µL||xx µL | ||
+ | |- | ||
+ | |experiment||9/10 pSB1C3||1.8µL||9/8 F3m2 attenuator||4.6µL||xx µL | ||
+ | |- | ||
+ | |experiment||9/10 pSB1C3||1.8µL||9/8 F1 attenuator||3.4µL||xx µL | ||
+ | |} | ||
+ | </div> | ||
+ | <!-- ここまでをコピーしてね --> | ||
+ | |||
+ | ===Miniprep=== | ||
+ | <div class="experiment"> | ||
+ | <span class="author">Nakamoto</span> | ||
+ | {|class="wikitable" | ||
+ | !DNA||concentration[µg/mL]||260/280||260/230 | ||
+ | |- | ||
+ | |spinach-DT||202.4||1.97||1.93 | ||
+ | |- | ||
+ | |Plux-RBS-GFP-DT||164.2||2.80||2.06 | ||
+ | |- | ||
+ | |Pcon-DT attenuator|205.4||1.81||2.39 | ||
+ | |- | ||
+ | |RSBJC3-2||240.8||1.73||1.43 | ||
+ | |- | ||
+ | |Plaz-1||240.8||1.73||1.43 | ||
+ | |} | ||
+ | </div> | ||
+ | <!-- ここまでをコピーしてね --> | ||
+ | |||
+ | ===Restriction Enzyme Digestion=== | ||
+ | <!-- こっから --> | ||
+ | <div class="experiment"> | ||
+ | <span class="author">Nakamoto</span> | ||
+ | {| class="wikitable" | ||
+ | ! ||9/10 Plux-RBS-GFP-DT||EcoR1||Spel||Buffer||BSA||MilliQ||total | ||
+ | |- | ||
+ | |2cuts||1µL||1µL||3µL||3µL||9.9µL||30µL | ||
+ | |- | ||
+ | |NC|| 0µL||0µL||1µL||1µL||7.4µL||10µL | ||
+ | |} | ||
+ | {| class="wikitable" | ||
+ | ! ||9/10 Spinach-DT||Xbal||Pstl||Buffer||BSA||MilliQ||total | ||
+ | |- | ||
+ | |2cuts||1µL||1µL||3µL||3µL||12.1µL||30µL | ||
+ | |- | ||
+ | |NC|| 0µL||0µL||1µL||1µL||7.5µL||10µL | ||
+ | |} | ||
+ | {| class="wikitable" | ||
+ | ! ||9/6 apt12-1R -DT||Xbal||Pstl||Buffer||BSA||MilliQ||total | ||
+ | |- | ||
+ | |2cuts||1µL||1µL||3µL||3µL||14.0µL||30µL | ||
+ | |- | ||
+ | |NC|| 0µL||0µL||1µL||1µL||7.6µL||10µL | ||
+ | |} | ||
+ | {| class="wikitable" | ||
+ | ! ||9/10 Pcon-pt81 attenuator ||EcoR1||Spel||Buffer||BSA||MilliQ||total | ||
+ | |- | ||
+ | |2cuts||1µL||1µL||3µL||3µL||12.2µL||30µL | ||
+ | |- | ||
+ | |NC|| 0µL||0µL||1µL||1µL||7.5µL||10µL | ||
+ | |} | ||
+ | </div> | ||
+ | <!-- ここまでをコピーしてね --> | ||
+ | |||
+ | ===Electrophoresis=== | ||
+ | |||
+ | <!-- こっから --> | ||
+ | <div class="experiment"> | ||
+ | <span class="author">じっけんしゃ</span> | ||
+ | {| class="wikitable" | ||
+ | !Lane||Sample||Enzyme1||Enzyme2 | ||
+ | |- | ||
+ | |1||100bp ladder||--||-- | ||
+ | |- | ||
+ | |2|| Plux-RBS-GEP-DT||EcoR1||Spel | ||
+ | |- | ||
+ | |3|| Plux-RBS-GEP-DT||--||-- | ||
+ | |- | ||
+ | |4||Spinach-DT||Xbal||Pstl | ||
+ | |- | ||
+ | |5||Spinach-DT||--||-- | ||
+ | |- | ||
+ | |6||aptamer 121R-DT||Xbal||Pstl | ||
+ | |- | ||
+ | |7||aptamer 121R-DT||--||-- | ||
+ | |- | ||
+ | |8||Pcon-pt181 attenuator|||EcoR1||Spel | ||
+ | |- | ||
+ | |9|| Pcon-pt181 attenuator||--||-- | ||
+ | |- | ||
+ | |10||100bp ladder||--||-- | ||
+ | |} | ||
+ | [[File:igku_xxxxxx.xxx]]<br> | ||
+ | </div> | ||
+ | <!-- ここまでをコピーしてね --> | ||
+ | |||
+ | |||
+ | ===Colony PCR=== | ||
+ | <!-- ここから --> | ||
+ | <div class="experiment"> | ||
+ | <span class="author">Tatsui</span> | ||
+ | {| class="wikitable" | ||
+ | !Sample||base pair | ||
+ | |- | ||
+ | |9/9 Pcon-pT181 antisense||-- | ||
+ | |- | ||
+ | |9/8 J223100(entA)||-- | ||
+ | |} | ||
+ | {| class="wikitable" | ||
+ | !PreDenature||Denature||Annealing||Extension||cycle | ||
+ | |- | ||
+ | |94°C||94°C||55°C||68°C||-- | ||
+ | |- | ||
+ | |5min||30s||30s||1min10sec|| | ||
+ | |} | ||
+ | </div> | ||
+ | <!-- ここまでをコピーしてね --> | ||
+ | |||
+ | ===Electrophoresis=== | ||
+ | |||
+ | <!-- こっから --> | ||
+ | <div class="experiment"> | ||
+ | <span class="author">Tatsui</span> | ||
+ | {| class="wikitable" | ||
+ | !Lane||Sample | ||
+ | |- | ||
+ | |1||100bp ladder | ||
+ | |- | ||
+ | |2||Pcon Pt181 antisense1+spinach-DT | ||
+ | |- | ||
+ | |3||Pcon Pt181 antisense2+spinach-DT | ||
+ | |- | ||
+ | |4||Pcon Pt181 antisense3+spinach-DT | ||
+ | |- | ||
+ | |5||Pcon Pt181 antisense4+spinach-DT | ||
+ | |- | ||
+ | |6||Pcon Pt181 antisense5+spinach-DT | ||
+ | |- | ||
+ | |7||Pcon Pt181 antisense6+spinach-DT | ||
+ | |- | ||
+ | |8||Pcon Pt181 antisense7+spinach-DT | ||
+ | |- | ||
+ | |9||Pcon Pt181 antisense8+spinach-DT | ||
+ | |- | ||
+ | |10||Pcon Pt181 antisense9+spinach-DT | ||
+ | |- | ||
+ | |11||Pcon Pt181 antisense10+spinach-DT | ||
+ | |- | ||
+ | |12||Pcon Pt181 antisense11+spinach-DT | ||
+ | |- | ||
+ | |13||Pcon Pt181 antisense12+spinach-DT | ||
+ | |- | ||
+ | |14||100bp ladder | ||
+ | |} | ||
+ | [[File:igku_xxxxxx.xxx]]<br> | ||
+ | {| class="wikitable" | ||
+ | !Lane||Sample | ||
+ | |- | ||
+ | |1||1kbp ladder | ||
+ | |- | ||
+ | |2||Pcon entA1 | ||
+ | |- | ||
+ | |3||Pcon entA2 | ||
+ | |- | ||
+ | |4||Pcon entA3 | ||
+ | |- | ||
+ | |5||1kbp ladder | ||
+ | |} | ||
+ | </div> | ||
+ | <!-- ここまでをコピーしてね --> | ||
+ | |||
+ | ===Gel Extraction=== | ||
+ | <!-- こっから --> | ||
+ | <div class="experiment"> | ||
+ | <span class="author">Tatsui</span> | ||
+ | {| class="wikitable" | ||
+ | !Lane||DNA||Enzyme | ||
+ | |- | ||
+ | |1||1kbp ladder||-- | ||
+ | |- | ||
+ | |2||KaiA(200pg)||-- | ||
+ | |- | ||
+ | |3||KaiA(200pg)||-- | ||
+ | |- | ||
+ | |4||--||-- | ||
+ | |- | ||
+ | |5||KaiA(400pg)||-- | ||
+ | |- | ||
+ | |6||KaiA(400pg)||-- | ||
+ | |- | ||
+ | |7||--||-- | ||
+ | |- | ||
+ | |8||KaiA(800pg||-- | ||
+ | |- | ||
+ | |9||KaiA(800pg)||-- | ||
+ | |- | ||
+ | |10||1kbp ladder||-- | ||
+ | |} | ||
+ | [[File:igku_xxbeforexx.xxx]]<br> | ||
+ | [[File:igku_xxafterxx.xxx]]<br> | ||
+ | {| class="wikitable" | ||
+ | !Lane||DNA||Enzyme | ||
+ | |- | ||
+ | |1||1kbp ladder||-- | ||
+ | |- | ||
+ | |2||PKaiBC(200pg)||-- | ||
+ | |- | ||
+ | |3||PKaiBC(200pg)||-- | ||
+ | |- | ||
+ | |4||--||-- | ||
+ | |- | ||
+ | |5||PKaiBC(400pg)||-- | ||
+ | |- | ||
+ | |6||PKaiBC(400pg)||-- | ||
+ | |- | ||
+ | |7||--||-- | ||
+ | |- | ||
+ | |8||PKaiBC(800pg||-- | ||
+ | |- | ||
+ | |9||PKaiBC(800pg)||-- | ||
+ | |- | ||
+ | |10||1kbp ladder||-- | ||
+ | |} | ||
+ | </div> | ||
+ | <!-- ここまでをコピーしてね --> | ||
+ | |||
+ | ===Liquid Culture=== | ||
+ | <!-- ここから --> | ||
+ | <div class="experiment"> | ||
+ | <span class="author">Hirano</span> | ||
+ | {| class="wikitable" | ||
+ | !Sample||medium | ||
+ | |- | ||
+ | |9/4 J23100①(JM109)||LB(Amp) | ||
+ | |- | ||
+ | |9/8 J23100① (entA)||LB(Amp) | ||
+ | |} | ||
+ | </div> | ||
+ | <!-- ここまでをコピーしてね --> | ||
+ | |||
+ | ===Gel Extraction=== | ||
+ | <!-- こっから --> | ||
+ | <div class="experiment"> | ||
+ | <span class="author">Tatsui</span> | ||
+ | {| class="wikitable" | ||
+ | !Lane||DNA||Enzyme | ||
+ | |- | ||
+ | |1||1kbp ladder||-- | ||
+ | |- | ||
+ | |2||KaiC||-- | ||
+ | |- | ||
+ | |3||KaiC||-- | ||
+ | |- | ||
+ | |4||KaiC||-- | ||
+ | |- | ||
+ | |5||--||-- | ||
+ | |- | ||
+ | |6||1kbp ladder||-- | ||
+ | |- | ||
+ | |7||1kbp ladder||-- | ||
+ | |- | ||
+ | |8||KaiC||-- | ||
+ | |- | ||
+ | |9||KaiC||-- | ||
+ | |- | ||
+ | |10||KaiC||-- | ||
+ | |11||--||-- | ||
+ | |- | ||
+ | |12||1kbp ladder||-- | ||
+ | |} | ||
+ | [[File:igku_xxbeforexx.xxx]]<br> | ||
+ | [[File:igku_xxafterxx.xxx]]<br> | ||
+ | {| class="wikitable" | ||
+ | !Name||concentration[µg/mL]||260/280||260/230 | ||
+ | |- | ||
+ | |(´ω`)|| || || | ||
+ | |- | ||
+ | |(ΦωΦ^)|| || || | ||
+ | |} | ||
+ | </div> | ||
+ | <!-- ここまでをコピーしてね --> | ||
+ | |||
+ | ===Liquid Culture=== | ||
+ | <!-- ここから --> | ||
+ | <div class="experiment"> | ||
+ | <span class="author">Tatsui</span> | ||
+ | {| class="wikitable" | ||
+ | !Sample||medium | ||
+ | |- | ||
+ | |9/10 Pcon-pt181 antisense-Spinach-DT||Plusgrow | ||
+ | |} | ||
+ | </div> | ||
+ | <!-- ここまでをコピーしてね --> | ||
+ | |||
+ | ===Colony PCR=== | ||
+ | <!-- ここから --> | ||
+ | <div class="experiment"> | ||
+ | <span class="author">No name</span> | ||
+ | {| class="wikitable" | ||
+ | !Sample||base pair | ||
+ | |- | ||
+ | |9/9 Phad larac-1 RBS-lux1-DT||2331 | ||
+ | |} | ||
+ | {| class="wikitable" | ||
+ | !PreDenature||Denature||Annealing||Extension||cycle | ||
+ | |- | ||
+ | |94°C||94°C||55°C||68°C||-- | ||
+ | |- | ||
+ | |5min||30s||30s||2min|| | ||
+ | |} | ||
+ | {| class="wikitable" | ||
+ | !Sample||base pair | ||
+ | |- | ||
+ | |9/9 Pcon-lacZα (psB4KS)||712 | ||
+ | |- | ||
+ | |9/9 Pcon-Spinach-DT(psB4KS)||605 | ||
+ | |} | ||
+ | {| class="wikitable" | ||
+ | !PreDenature||Denature||Annealing||Extension||cycle | ||
+ | |- | ||
+ | |94°C||94°C||55°C||68°C||-- | ||
+ | |- | ||
+ | |5min||30s||30s||42s|| | ||
+ | |} | ||
+ | {| class="wikitable" | ||
+ | !Sample||base pair | ||
+ | |- | ||
+ | |9/9 Plac+RBS-lysis3}-DT||1273 | ||
+ | |- | ||
+ | |9/9 Pcon+RBS-lux1-DT||1079 | ||
+ | |} | ||
+ | {| class="wikitable" | ||
+ | !PreDenature||Denature||Annealing||Extension||cycle | ||
+ | |- | ||
+ | |94°C||94°C||55°C||68°C||-- | ||
+ | |- | ||
+ | |5min||30s||30s||1min12s|| | ||
+ | |} | ||
+ | |||
+ | </div> | ||
+ | <!-- ここまでをコピーしてね --> | ||
+ | |||
+ | ===Electrophoresis=== | ||
+ | |||
+ | <!-- こっから --> | ||
+ | <div class="experiment"> | ||
+ | <span class="author">No name</span> | ||
+ | {| class="wikitable" | ||
+ | !Lane||Sample||Enzyme1||Enzyme2 | ||
+ | |- | ||
+ | |1||100bp ladder||--||-- | ||
+ | |- | ||
+ | |2||9/9 Pcou-RBS-lacZα-DT(p3B4KS9)-1||--||-- | ||
+ | |- | ||
+ | |3||9/9 Pcou-RBS-lacZα-DT(p3B4KS9)-2||--||-- | ||
+ | |- | ||
+ | |4||9/9 Pcou-Spinach-DT(pB4KS)-1||--||-- | ||
+ | |- | ||
+ | |5||9/9 Pcou-Spinach-DT(pB4KS)-2||--||-- | ||
+ | |- | ||
+ | |6||100bp ladder||--||-- | ||
+ | |} | ||
+ | [[File:igku_xxxxxx.xxx]]<br> | ||
+ | </div> | ||
+ | <!-- ここまでをコピーしてね --> | ||
+ | ===Transformation=== | ||
+ | <div class="experiment"> | ||
+ | <span class="author">Nakamoto</span> | ||
+ | {| class="wikitable" | ||
+ | !Name||Sample||Competent Cells||Total||Plate | ||
+ | |- | ||
+ | |F1 attenuator +p3B1C3||µL||µL||µL||CP | ||
+ | |- | ||
+ | |F3n2 attenuator +p3B1C3||µL||µL||µL||CP | ||
+ | |- | ||
+ | |F1 antisense +p3B1C3||µL||µL||µL||CP | ||
+ | |- | ||
+ | |F6 antisense+p3B1C3||µL||µL||µL||CP | ||
+ | |- | ||
+ | |apt12-P +p3B1C3||µL||µL||µL||CP | ||
+ | |- | ||
+ | |apt12-1M +p3B1C3||µL||µL||µL||CP | ||
+ | |- | ||
+ | |Pcon-luxR+Plux-GFP||µL||µL||µL||Amp | ||
+ | |- | ||
+ | |Plux+RBS-lysis1-DT||µL||µL||µL||CP | ||
+ | |- | ||
+ | |Plux+RBS-lysis2-DT||µL||µL||µL||CP | ||
+ | |- | ||
+ | |Ptet-pT181antisense+Spinach-DT||µL||µL||µL||CP | ||
+ | |- | ||
+ | |Pcon-pT181 attenuator+apt121R-DT||µL||µL||µL||Amp | ||
+ | |- | ||
+ | |Pcon-1 apt12-1R-DT||µL||µL||µL||Amp | ||
+ | |- | ||
+ | |DT+Pcon-pT181 attenuator||µL||µL||µL||CP | ||
+ | |} | ||
+ | </div> | ||
+ | <!-- ここまでをコピーしてね --> | ||
+ | |||
+ | ===Electrophoresis=== | ||
+ | |||
+ | <!-- こっから --> | ||
+ | <div class="experiment"> | ||
+ | <span class="author">Okazaki</span> | ||
+ | {| class="wikitable" | ||
+ | !Lane||Sample||Enzyme1||Enzyme2 | ||
+ | |- | ||
+ | |1||100bp ladder||--||-- | ||
+ | |- | ||
+ | |2||Spinach-DT||Xbal||Ptsl | ||
+ | |- | ||
+ | |3||Spinach-DT||Xbal||Ptsl | ||
+ | |- | ||
+ | |4||Spinach-DT||Xbal||Ptsl | ||
+ | |- | ||
+ | |5||Spinach-DT||Xbal||Ptsl | ||
+ | |- | ||
+ | |6||100bp ladder||--||-- | ||
+ | |} | ||
+ | [[File:igku_xxxxxx.xxx]]<br> | ||
+ | {| class="wikitable" | ||
+ | !Lane||Sample||Enzyme1||Enzyme2 | ||
+ | |- | ||
+ | |1||100bp ladder||--||-- | ||
+ | |- | ||
+ | |2||Pcon-pT181 attenuator||EcoR1||Spel | ||
+ | |- | ||
+ | |3||Pcon-pT181 attenuator||EcoR1||Spel | ||
+ | |- | ||
+ | |4||Pcon-pT181 attenuator||EcoR1||Spel | ||
+ | |- | ||
+ | |5||Pcon-pT181 attenuator||EcoR1||Spel | ||
+ | |- | ||
+ | |6||100bp ladder||--||-- | ||
+ | |} | ||
+ | [[File:igku_xxxxxx.xxx]]<br> | ||
+ | {| class="wikitable" | ||
+ | !Lane||Sample||Enzyme1||Enzyme2 | ||
+ | |- | ||
+ | |1||Plux-RBS-GFP-DT||EcoR1||Spel | ||
+ | |||
+ | |- | ||
+ | |2||Plux-RBS-GFP-DT ||EcoR1||Spel | ||
+ | |- | ||
+ | |3||Plux-RBS-GFP-DT ||EcoR1||Spel | ||
+ | |- | ||
+ | |4||Plux-RBS-GFP-DT ||EcoR1||Spel | ||
+ | |- | ||
+ | |5||100bp ladder||--||-- | ||
+ | |- | ||
+ | |6||apt12-1R-DT||Xbal||Pstl | ||
+ | |- | ||
+ | |7||apt12-1R-DT||Xbal||Pstl | ||
+ | |- | ||
+ | |8||apt12-1R-DT||Xbal||Pstl | ||
+ | |- | ||
+ | |9||apt12-1R-DT||Xbal||Pstl | ||
+ | |} | ||
+ | [[File:igku_xxxxxx.xxx]]<br> | ||
+ | |||
+ | </div> | ||
+ | <!-- ここまでをコピーしてね --> |
Revision as of 13:08, 24 September 2013
Contents |
Sep 10
Ligation
state | Vector | Inserter | Ligation High ver.2 | ||
---|---|---|---|---|---|
experiment | 9/6 Pcon-RBS-luxR-DT | 1.9µL | 9/6Plux-RBS-GFP-DT | 22 µL | µL |
experiment | 9/6 Plux | 2µL | 9/8 RBS-lysis1-DT | 6.6µL | xx µL |
experiment | 9/6 Plux | 2µL | 9/8 RBS-lysis2-DT | 6.3µL | xx µL |
experiment | 9/8 Ptet-PT181 antisense | 1.6µL | 9/8 spinach-DT | 4.4µL | xx µL |
experiment | 9/8 Pcon-PT181 attenuator | 3.4µL | 9/8 apz 12-1R-PT | 2.1µL | xx µL |
experiment | 9/8 Pcon | 3.4µL | 9/8 apz 12-1R-PT | 2.3µL | xx µL |
experiment | 9/8 DT | 3.0µL | 9/8 Pcon-PT181 attenuator | 7.9µL | xx µL |
experiment | 9/10 pSB1C3 | 1.8µL | 9/8 F3m2 attenuator | 4.6µL | xx µL |
experiment | 9/10 pSB1C3 | 1.8µL | 9/8 F1 attenuator | 3.4µL | xx µL |
Miniprep
DNA | concentration[µg/mL] | 260/280 | 260/230 |
---|---|---|---|
spinach-DT | 202.4 | 1.97 | 1.93 |
Plux-RBS-GFP-DT | 164.2 | 2.80 | 2.06 |
205.4 | 1.81 | 2.39 | |
RSBJC3-2 | 240.8 | 1.73 | 1.43 |
Plaz-1 | 240.8 | 1.73 | 1.43 |
Restriction Enzyme Digestion
9/10 Plux-RBS-GFP-DT | EcoR1 | Spel | Buffer | BSA | MilliQ | total | |
---|---|---|---|---|---|---|---|
2cuts | 1µL | 1µL | 3µL | 3µL | 9.9µL | 30µL | |
NC | 0µL | 0µL | 1µL | 1µL | 7.4µL | 10µL |
9/10 Spinach-DT | Xbal | Pstl | Buffer | BSA | MilliQ | total | |
---|---|---|---|---|---|---|---|
2cuts | 1µL | 1µL | 3µL | 3µL | 12.1µL | 30µL | |
NC | 0µL | 0µL | 1µL | 1µL | 7.5µL | 10µL |
9/6 apt12-1R -DT | Xbal | Pstl | Buffer | BSA | MilliQ | total | |
---|---|---|---|---|---|---|---|
2cuts | 1µL | 1µL | 3µL | 3µL | 14.0µL | 30µL | |
NC | 0µL | 0µL | 1µL | 1µL | 7.6µL | 10µL |
9/10 Pcon-pt81 attenuator | EcoR1 | Spel | Buffer | BSA | MilliQ | total | |
---|---|---|---|---|---|---|---|
2cuts | 1µL | 1µL | 3µL | 3µL | 12.2µL | 30µL | |
NC | 0µL | 0µL | 1µL | 1µL | 7.5µL | 10µL |
Electrophoresis
Lane | Sample | Enzyme1 | Enzyme2 |
---|---|---|---|
1 | 100bp ladder | -- | -- |
2 | Plux-RBS-GEP-DT | EcoR1 | Spel |
3 | Plux-RBS-GEP-DT | -- | -- |
4 | Spinach-DT | Xbal | Pstl |
5 | Spinach-DT | -- | -- |
6 | aptamer 121R-DT | Xbal | Pstl |
7 | aptamer 121R-DT | -- | -- |
8 | Pcon-pt181 attenuator | EcoR1 | Spel |
9 | Pcon-pt181 attenuator | -- | -- |
10 | 100bp ladder | -- | -- |
Colony PCR
Sample | base pair |
---|---|
9/9 Pcon-pT181 antisense | -- |
9/8 J223100(entA) | -- |
PreDenature | Denature | Annealing | Extension | cycle |
---|---|---|---|---|
94°C | 94°C | 55°C | 68°C | -- |
5min | 30s | 30s | 1min10sec |
Electrophoresis
Lane | Sample |
---|---|
1 | 100bp ladder |
2 | Pcon Pt181 antisense1+spinach-DT |
3 | Pcon Pt181 antisense2+spinach-DT |
4 | Pcon Pt181 antisense3+spinach-DT |
5 | Pcon Pt181 antisense4+spinach-DT |
6 | Pcon Pt181 antisense5+spinach-DT |
7 | Pcon Pt181 antisense6+spinach-DT |
8 | Pcon Pt181 antisense7+spinach-DT |
9 | Pcon Pt181 antisense8+spinach-DT |
10 | Pcon Pt181 antisense9+spinach-DT |
11 | Pcon Pt181 antisense10+spinach-DT |
12 | Pcon Pt181 antisense11+spinach-DT |
13 | Pcon Pt181 antisense12+spinach-DT |
14 | 100bp ladder |
Lane | Sample |
---|---|
1 | 1kbp ladder |
2 | Pcon entA1 |
3 | Pcon entA2 |
4 | Pcon entA3 |
5 | 1kbp ladder |
Gel Extraction
Lane | DNA | Enzyme |
---|---|---|
1 | 1kbp ladder | -- |
2 | KaiA(200pg) | -- |
3 | KaiA(200pg) | -- |
4 | -- | -- |
5 | KaiA(400pg) | -- |
6 | KaiA(400pg) | -- |
7 | -- | -- |
8 | KaiA(800pg | -- |
9 | KaiA(800pg) | -- |
10 | 1kbp ladder | -- |
File:Igku xxbeforexx.xxx
File:Igku xxafterxx.xxx
Lane | DNA | Enzyme |
---|---|---|
1 | 1kbp ladder | -- |
2 | PKaiBC(200pg) | -- |
3 | PKaiBC(200pg) | -- |
4 | -- | -- |
5 | PKaiBC(400pg) | -- |
6 | PKaiBC(400pg) | -- |
7 | -- | -- |
8 | PKaiBC(800pg | -- |
9 | PKaiBC(800pg) | -- |
10 | 1kbp ladder | -- |
Liquid Culture
Sample | medium |
---|---|
9/4 J23100①(JM109) | LB(Amp) |
9/8 J23100① (entA) | LB(Amp) |
Gel Extraction
Lane | DNA | Enzyme | |||
---|---|---|---|---|---|
1 | 1kbp ladder | -- | |||
2 | KaiC | -- | |||
3 | KaiC | -- | |||
4 | KaiC | -- | |||
5 | -- | -- | |||
6 | 1kbp ladder | -- | |||
7 | 1kbp ladder | -- | |||
8 | KaiC | -- | |||
9 | KaiC | -- | |||
10 | KaiC | -- | 11 | -- | -- |
12 | 1kbp ladder | -- |
File:Igku xxbeforexx.xxx
File:Igku xxafterxx.xxx
Name | concentration[µg/mL] | 260/280 | 260/230 |
---|---|---|---|
(´ω`) | |||
(ΦωΦ^) |
Liquid Culture
Sample | medium |
---|---|
9/10 Pcon-pt181 antisense-Spinach-DT | Plusgrow |
Colony PCR
Sample | base pair |
---|---|
9/9 Phad larac-1 RBS-lux1-DT | 2331 |
PreDenature | Denature | Annealing | Extension | cycle |
---|---|---|---|---|
94°C | 94°C | 55°C | 68°C | -- |
5min | 30s | 30s | 2min |
Sample | base pair |
---|---|
9/9 Pcon-lacZα (psB4KS) | 712 |
9/9 Pcon-Spinach-DT(psB4KS) | 605 |
PreDenature | Denature | Annealing | Extension | cycle |
---|---|---|---|---|
94°C | 94°C | 55°C | 68°C | -- |
5min | 30s | 30s | 42s |
Sample | base pair |
---|---|
9/9 Plac+RBS-lysis3}-DT | 1273 |
9/9 Pcon+RBS-lux1-DT | 1079 |
PreDenature | Denature | Annealing | Extension | cycle |
---|---|---|---|---|
94°C | 94°C | 55°C | 68°C | -- |
5min | 30s | 30s | 1min12s |
Electrophoresis
Lane | Sample | Enzyme1 | Enzyme2 |
---|---|---|---|
1 | 100bp ladder | -- | -- |
2 | 9/9 Pcou-RBS-lacZα-DT(p3B4KS9)-1 | -- | -- |
3 | 9/9 Pcou-RBS-lacZα-DT(p3B4KS9)-2 | -- | -- |
4 | 9/9 Pcou-Spinach-DT(pB4KS)-1 | -- | -- |
5 | 9/9 Pcou-Spinach-DT(pB4KS)-2 | -- | -- |
6 | 100bp ladder | -- | -- |
Transformation
Name | Sample | Competent Cells | Total | Plate |
---|---|---|---|---|
F1 attenuator +p3B1C3 | µL | µL | µL | CP |
F3n2 attenuator +p3B1C3 | µL | µL | µL | CP |
F1 antisense +p3B1C3 | µL | µL | µL | CP |
F6 antisense+p3B1C3 | µL | µL | µL | CP |
apt12-P +p3B1C3 | µL | µL | µL | CP |
apt12-1M +p3B1C3 | µL | µL | µL | CP |
Pcon-luxR+Plux-GFP | µL | µL | µL | Amp |
Plux+RBS-lysis1-DT | µL | µL | µL | CP |
Plux+RBS-lysis2-DT | µL | µL | µL | CP |
Ptet-pT181antisense+Spinach-DT | µL | µL | µL | CP |
Pcon-pT181 attenuator+apt121R-DT | µL | µL | µL | Amp |
Pcon-1 apt12-1R-DT | µL | µL | µL | Amp |
DT+Pcon-pT181 attenuator | µL | µL | µL | CP |
Electrophoresis
Lane | Sample | Enzyme1 | Enzyme2 |
---|---|---|---|
1 | 100bp ladder | -- | -- |
2 | Spinach-DT | Xbal | Ptsl |
3 | Spinach-DT | Xbal | Ptsl |
4 | Spinach-DT | Xbal | Ptsl |
5 | Spinach-DT | Xbal | Ptsl |
6 | 100bp ladder | -- | -- |
Lane | Sample | Enzyme1 | Enzyme2 |
---|---|---|---|
1 | 100bp ladder | -- | -- |
2 | Pcon-pT181 attenuator | EcoR1 | Spel |
3 | Pcon-pT181 attenuator | EcoR1 | Spel |
4 | Pcon-pT181 attenuator | EcoR1 | Spel |
5 | Pcon-pT181 attenuator | EcoR1 | Spel |
6 | 100bp ladder | -- | -- |
Lane | Sample | Enzyme1 | Enzyme2 |
---|---|---|---|
1 | Plux-RBS-GFP-DT | EcoR1 | Spel |
2 | Plux-RBS-GFP-DT | EcoR1 | Spel |
3 | Plux-RBS-GFP-DT | EcoR1 | Spel |
4 | Plux-RBS-GFP-DT | EcoR1 | Spel |
5 | 100bp ladder | -- | -- |
6 | apt12-1R-DT | Xbal | Pstl |
7 | apt12-1R-DT | Xbal | Pstl |
8 | apt12-1R-DT | Xbal | Pstl |
9 | apt12-1R-DT | Xbal | Pstl |