Template:Kyoto/Notebook/Sep 24
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==Sep 24== | ==Sep 24== | ||
+ | ===Electrophoresis=== | ||
+ | |||
+ | <div class="experiment"> | ||
+ | <span class="author">No name</span> | ||
+ | {| class="wikitable" | ||
+ | !Lane||Sample|- | ||
+ | |1||9/20 Pcon-pT181aptamer12-1R-DT 1 | ||
+ | |- | ||
+ | |2||9/20 Pcon-pT181aptamer12-1R-DT 2 | ||
+ | |- | ||
+ | |3||9/20 Pcon-pT181aptamer12-1R-DT 3 | ||
+ | |- | ||
+ | |4||9/20 Pcon-pT181aptamer12-1R-DT 4 | ||
+ | |- | ||
+ | |5||9/20 Pcon-pT181aptamer12-1R-DT 5 | ||
+ | |- | ||
+ | |6||9/20 Pcon-pT181aptamer12-1R-DT 6 | ||
+ | |- | ||
+ | |7||9/20 Pcon-pT181aptamer12-1R-DT 7 | ||
+ | |- | ||
+ | |8||9/20 Pcon-pT181aptamer12-1R-DT 8 | ||
+ | |- | ||
+ | |9||100bp ladder | ||
+ | |- | ||
+ | |10||9/22 Pcon-pT181attenuator-aptamer12-1R-DT 1 | ||
+ | |- | ||
+ | |11||9/22 Pcon-pT181attenuator-aptamer12-1R-DT 2 | ||
+ | |- | ||
+ | |12||9/22 Pcon-pT181attenuator-aptamer12-1R-DT 3 | ||
+ | |- | ||
+ | |13||9/22 Pcon-pT181attenuator-aptamer12-1R-DT 4 | ||
+ | |- | ||
+ | |14||9/20 Plac-aptamer12-1R-DT 1 | ||
+ | |- | ||
+ | |15||9/20 Plac-aptamer12-1R-DT 2 | ||
+ | |- | ||
+ | |16||9/20 Plac-aptamer12-1R-DT 3 | ||
+ | |- | ||
+ | |17||9/20 Plac-aptamer12-1R-DT 4 | ||
+ | |} | ||
+ | [[File:igkuxxxx.png]]<br> | ||
+ | </div> | ||
+ | |||
+ | ===Transformation=== | ||
+ | <div class="experiment"> | ||
+ | <span class="author">No name </span> | ||
+ | {| class="wikitable" | ||
+ | !Name||Sample||Competent Cells||Total||Plate | ||
+ | |- | ||
+ | |9/23 pSB1C3-pT181attenuator ||2 µL||20 µL ||22 µL||LB (+CP) | ||
+ | |- | ||
+ | |RBS-GFP-DT+Pcon-pT181attenuator ||2 µL||20 µL ||22 µL||LB (+CP) | ||
+ | |- | ||
+ | |9/23 Plac-+spinach-DT||2 µL||20 µL ||22 µL||LB (+Amp) | ||
+ | |- | ||
+ | |9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT ||2 µL||20 µL ||22 µL||LB (+Amp) | ||
+ | |- | ||
+ | |9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT ||2 µL||20 µL ||22 µL||LB (+Amp) | ||
+ | |- | ||
+ | |9/23 Pcon-RBS-tetR-DT+Pcon-RBS-GFP-DT ||2 µL||20 µL ||22 µL||LB (+Amp) | ||
+ | |- | ||
+ | |9/23 Pcon-pT181antisense-DT ||2 µL||20 µL ||22 µL||LB (+CP) | ||
+ | |- | ||
+ | |9/23 Pcon-pT181attenuator-RBS-GFP-DT ||2 µL||20 µL ||22 µL||LB (+CP) | ||
+ | |- | ||
+ | |9/23 Pcon-pT181attenuator-aptamer12-1R-DT ||2 µL||20 µL ||22 µL||LB (+CP) | ||
+ | |- | ||
+ | |PUC19||2 µL||20 µL ||22 µL||LB (+Amp) | ||
+ | |- | ||
+ | |Ptet-RBS-lacZα-DT ||2 µL||20 µL ||22 µL||LB (+CP) | ||
+ | |||
+ | |pSB1C3||2 µL||20 µL ||22 µL||LB (+CP) | ||
+ | |} | ||
+ | </div> | ||
+ | |||
+ | ===Liquid Culture=== | ||
+ | <div class="experiment"> | ||
+ | <span class="author">No name </span> | ||
+ | {| class="wikitable" | ||
+ | !Sample||medium | ||
+ | |- | ||
+ | |aptamer12-1R-DT(Master plate) ||LB(+CP) | ||
+ | |} | ||
+ | </div> | ||
+ | |||
+ | ===Transformation=== | ||
+ | <div class="experiment"> | ||
+ | <span class="author">No name </span> | ||
+ | {| class="wikitable" | ||
+ | !Name||Sample||Competent Cells||Total||Plate | ||
+ | |- | ||
+ | |9/23 Pcon-attenuator-aptamer12-1R-DT ||2 µL||20 µL ||22 µL||LB (+CP) | ||
+ | |- | ||
+ | |9/23 pT181attenuator(1C3) ||2 µL||20 µL ||22 µL||LB (+CP) | ||
+ | |- | ||
+ | |9/23 Pcon-pT181antisense-DT||2 µL||20 µL ||22 µL||LB (+CP) | ||
+ | |- | ||
+ | |9/23 Pcon-pT181attenuator-RBS--GFP-DT ||2 µL||20 µL ||22 µL||LB (+CP) | ||
+ | |} | ||
+ | </div> | ||
+ | ===Liquid Culture=== | ||
+ | <div class="experiment"> | ||
+ | <span class="author">No name </span> | ||
+ | {| class="wikitable" | ||
+ | !Sample||medium | ||
+ | |- | ||
+ | |pSB1C3 (Master plate-1) ||LB(+CP) | ||
+ | |} | ||
+ | </div> | ||
+ | |||
+ | === Digestion=== | ||
+ | <div class="experiment"> | ||
+ | <span class="author">Kojima </span> | ||
+ | {| class="wikitable" | ||
+ | ! ||8/21 pT181attenuator (330 µg/mL) ||XbaI||PstI||buffer ||BSA||MilliQ||total | ||
+ | |- | ||
+ | |2 cuts||6.1||1||1||3||3||15.9||30 | ||
+ | |- | ||
+ | |NC||0.3||0||0||1||1||7.7||10 | ||
+ | |} | ||
+ | {| class="wikitable" | ||
+ | ! ||9/22 Pcon-pT181attenuator (368.3 µg/mL) ||EcoRI||SpeI||buffer ||BSA||MilliQ||total | ||
+ | |- | ||
+ | |2 cuts||5.4||1||1||3||0||19.6||30 | ||
+ | |- | ||
+ | |NC||0.3||0||0||1||0||8.7||10 | ||
+ | |} | ||
+ | {| class="wikitable" | ||
+ | ! ||9/16 pSB1C3||EcoRI||SpeI||buffer ||BSA||MilliQ||total | ||
+ | |- | ||
+ | |2 cuts||18||1||1||3||0||7.0||30 | ||
+ | |- | ||
+ | |NC||0.9||0||0||1||0||8.1||10 | ||
+ | |} | ||
+ | </div> | ||
+ | |||
+ | ===Electrophoresis=== | ||
+ | <div class="experiment"> | ||
+ | <span class="author">No name</span> | ||
+ | {| class="wikitable" | ||
+ | !Lane||Sample||Enzyme1||Enzyme2 | ||
+ | |- | ||
+ | |1||1kb ladder||-||- | ||
+ | |- | ||
+ | |2||pT181attenuator ||XbaI||PstI | ||
+ | |- | ||
+ | |3|| pT181attenuator ||--||-- | ||
+ | |- | ||
+ | |4||Pcon-pT181attenuator ||EcoRI||SpeI | ||
+ | |- | ||
+ | |5|| Pcon-pT181attenuator ||--||-- | ||
+ | |- | ||
+ | |6||pSB1C3 ||EcoRI||SpeI | ||
+ | |- | ||
+ | |7|| pSB1C3 ||--||-- | ||
+ | |}<br> | ||
+ | [[File:xxx]]<br> | ||
+ | <br> | ||
+ | |||
+ | </div> | ||
+ | ===Miniprep=== | ||
+ | <div class="experiment"> | ||
+ | <span class="author">No name</span> | ||
+ | {|class="wikitable" | ||
+ | !DNA||concentration[µg/mL]||260/280||260/230 | ||
+ | |- | ||
+ | |9/24 aptamer12-1R-DT||144.7||1.03||1.21 | ||
+ | |} | ||
+ | </div> | ||
+ | ===Gel Extraction=== | ||
+ | <div class="experiment"> | ||
+ | <span class="author">Kojima</span> | ||
+ | {| class="wikitable" | ||
+ | !Lane||DNA||Enzyme | ||
+ | |- | ||
+ | |1||100kb ladder||--||-- | ||
+ | |- | ||
+ | |2||pT181attenuator||XbaI||PstI | ||
+ | |- | ||
+ | |3|| pT181attenuator||XbaI||PstI | ||
+ | |- | ||
+ | |4|| pT181attenuator||XbaI||PstI | ||
+ | |- | ||
+ | |5||--||--||-- | ||
+ | |- | ||
+ | |6||Pcon-pT181attenuator||EcoRI||SpeI | ||
+ | |- | ||
+ | |7|| Pcon-pT181attenuator||EcoRI||SpeI | ||
+ | |- | ||
+ | |8|| Pcon-pT181attenuator||EcoRI||SpeI | ||
+ | |- | ||
+ | |9||--||--||-- | ||
+ | |- | ||
+ | |10||pSB1C3||EcoRI||SpeI | ||
+ | |- | ||
+ | |11|| pSB1C3||EcoRI||SpeI | ||
+ | |- | ||
+ | |12|| pSB1C3||EcoRI||SpeI | ||
+ | |} | ||
+ | [[File:Igkuxxx.jpg]]<br> | ||
+ | [[File:Igku Axxxjpg]]<br> | ||
+ | |||
+ | {| class="wikitable" | ||
+ | !Name||concentration[µg/mL]||260/280||260/230 | ||
+ | |- | ||
+ | |pT181attenuator(XbaI&PstI)||10.1 ||2.02 ||0.43 | ||
+ | |- | ||
+ | |Pcon-pT181attenuator(EcoRI&SpeI)||10.3 ||1.81 ||0.32 | ||
+ | |- | ||
+ | |pSB1C3(EcoRI&SpeI)||10.0||2.81||0.02 | ||
+ | |} | ||
+ | </div> | ||
+ | |||
+ | ===Colony PCR=== | ||
+ | <div class="experiment"> | ||
+ | <span class="author">Nakamoto</span> | ||
+ | {| class="wikitable" | ||
+ | !Sample||base pair | ||
+ | |- | ||
+ | |9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 1||1414 | ||
+ | |- | ||
+ | |9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 2||1414 | ||
+ | |- | ||
+ | |9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 3||1414 | ||
+ | |- | ||
+ | |9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 4||1414 | ||
+ | |- | ||
+ | |9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 5||1414 | ||
+ | |- | ||
+ | |9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 6||1414 | ||
+ | |- | ||
+ | |9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 7||1414 | ||
+ | |- | ||
+ | |9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 8||1414 | ||
+ | |- | ||
+ | |9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 1||1631 | ||
+ | |- | ||
+ | |9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 2||1631 | ||
+ | |- | ||
+ | |9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 3||1631 | ||
+ | |- | ||
+ | |9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 4||1631 | ||
+ | |- | ||
+ | |9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 5||1631 | ||
+ | |- | ||
+ | |9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 6||1631 | ||
+ | |- | ||
+ | |9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 7||1631 | ||
+ | |- | ||
+ | |9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 8||1631 | ||
+ | |- | ||
+ | |9/23 Pcon-RBS-tetR-DT+Pcon-RBS-GFP-DT 1||2042 | ||
+ | |- | ||
+ | |9/23 Pcon-RBS-tetR-DT+Pcon-RBS-GFP-DT 2||2042 | ||
+ | |- | ||
+ | |9/23 Pcon-RBS-tetR-DT+Pcon-RBS-GFP-DT 3||2042 | ||
+ | |- | ||
+ | |9/23 Pcon-RBS-tetR-DT+Pcon-RBS-GFP-DT 4||2042 | ||
+ | |- | ||
+ | |9/23 Pcon-pT181antisense-DT 1||508 | ||
+ | |- | ||
+ | |9/23 Pcon-pT181antisense-DT 2||508 | ||
+ | |- | ||
+ | |9/23 Pcon-pT181antisense-DT 3||508 | ||
+ | |- | ||
+ | |9/23 Pcon-pT181antisense-DT 4||508 | ||
+ | |- | ||
+ | |9/23 Pcon-pT181antisense-DT 5||508 | ||
+ | |- | ||
+ | |9/23 Pcon-pT181antisense-DT 6||508 | ||
+ | |- | ||
+ | |9/23 Pcon-pT181antisense-DT 7||508 | ||
+ | |- | ||
+ | |9/23 Pcon-pT181antisense-DT 8||508 | ||
+ | |} | ||
+ | {| class="wikitable" | ||
+ | !PreDenature||Denature||Annealing||Extension||cycle | ||
+ | |- | ||
+ | |94 °C||94 °C||55 °C||68 °C||-- | ||
+ | |- | ||
+ | |5 min||30 sec||30 sec||2min||30 cycles | ||
+ | |} | ||
+ | </div> | ||
+ | |||
+ | {| class="wikitable" | ||
+ | !Lane||Sample | ||
+ | |- | ||
+ | |1||9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 1 | ||
+ | |- | ||
+ | |2||9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 2 | ||
+ | |- | ||
+ | |3||9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 3 | ||
+ | |- | ||
+ | |4||9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 4 | ||
+ | |- | ||
+ | |5||9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 5 | ||
+ | |- | ||
+ | |6||9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 6 | ||
+ | |- | ||
+ | |7||9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 7 | ||
+ | |- | ||
+ | |8||9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 8 | ||
+ | |- | ||
+ | |9||1kb ladder | ||
+ | |- | ||
+ | |10||9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 1 | ||
+ | |- | ||
+ | |11||9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 2 | ||
+ | |- | ||
+ | |12||9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 3 | ||
+ | |- | ||
+ | |13||9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 4 | ||
+ | |- | ||
+ | |14||9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 5 | ||
+ | |- | ||
+ | |15||9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 6 | ||
+ | |- | ||
+ | |16||9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 7 | ||
+ | |- | ||
+ | |17||9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 8 | ||
+ | |} | ||
+ | [[File:igkuxxxx.png]]<br> | ||
+ | </div> | ||
+ | |||
+ | {| class="wikitable" | ||
+ | !Lane||Sample | ||
+ | |- | ||
+ | |1||9/23 Pcon-RBS-tetR-DT+Pcon-RBS-GFP-DT 1 | ||
+ | |- | ||
+ | |2||9/23 Pcon-RBS-tetR-DT+Pcon-RBS-GFP-DT 2 | ||
+ | |- | ||
+ | |3||9/23 Pcon-RBS-tetR-DT+Pcon-RBS-GFP-DT 3 | ||
+ | |- | ||
+ | |4||9/23 Pcon-RBS-tetR-DT+Pcon-RBS-GFP-DT 4 | ||
+ | |- | ||
+ | |5||9/23 Pcon-pT181antisense-DT 1 | ||
+ | |- | ||
+ | |6||9/23 Pcon-pT181antisense-DT 2 | ||
+ | |- | ||
+ | |7||1kb ladder | ||
+ | |- | ||
+ | |8||9/23 Pcon-pT181antisense-DT 3 | ||
+ | |- | ||
+ | |9||9/23 Pcon-pT181antisense-DT 4 | ||
+ | |- | ||
+ | |10||9/23 Pcon-pT181antisense-DT 5 | ||
+ | |- | ||
+ | |11||9/23 Pcon-pT181antisense-DT 6 | ||
+ | |- | ||
+ | |12||9/23 Pcon-pT181antisense-DT 7 | ||
+ | |- | ||
+ | |13||9/23 Pcon-pT181antisense-DT 8 | ||
+ | |- | ||
+ | |14||-- | ||
+ | |} | ||
+ | [[File:igkuxxxx.png]]<br> | ||
+ | </div> | ||
+ | |||
+ | ===Restriction Enzyme Digestion=== | ||
+ | <div class="experiment"> | ||
+ | <span class="author">Nakamoto</span> | ||
+ | {| class="wikitable" | ||
+ | !9/24 aptamer12-1R-DT ||EcoRI||XbaI || buffer||BSA||MilliQ||total | ||
+ | |- | ||
+ | |2cuts||17.5µL||1.0µL ||1.0µL ||3.0µL ||3.0µL ||4.5µL ||30µL | ||
+ | |- | ||
+ | |NC||0.9µL ||0µL ||0µL ||1.0µL ||1.0µL ||7.1µL ||10µL | ||
+ | |} | ||
+ | {| class="wikitable" | ||
+ | !9/20 Ptet||SpeI||PstI || buffer||BSA||MilliQ||total | ||
+ | |- | ||
+ | |2cuts||9.5µL||1.0µL ||1.0µL ||3.0µL ||0µL ||15.5µL ||30µL | ||
+ | |- | ||
+ | |NC||0.5µL ||0µL ||0µL ||1.0µL ||0µL ||8.5µL ||10µL | ||
+ | |} | ||
+ | {| class="wikitable" | ||
+ | !9/22 RBS-GFP-DT||EcoRI ||SpeI || buffer||BSA||MilliQ||total | ||
+ | |- | ||
+ | |2cuts||3.8µL||1.0µL ||1.0µL ||3.0µL ||0µL ||21.2µL ||30µL | ||
+ | |- | ||
+ | |NC||0.2µL ||0µL ||0µL ||1.0µL ||0µL ||8.8µL ||10µL | ||
+ | |} | ||
+ | {| class="wikitable" | ||
+ | !9/22 Pcon-RBS-GFP-DT||EcoRI ||XbaI || buffer||BSA||MilliQ||total | ||
+ | |- | ||
+ | |2cuts||2.4µL||1.0µL ||1.0µL ||3.0µL ||3.0µL ||19.6µL ||30µL | ||
+ | |- | ||
+ | |NC||0.1µL ||0µL ||0µL ||1.0µL ||1.0µL ||7.9µL ||10µL | ||
+ | |} | ||
+ | {| class="wikitable" | ||
+ | !9/22 Pcon-pT181attenuator 1 ||EcoRI ||XbaI || buffer||BSA||MilliQ||total | ||
+ | |- | ||
+ | |2cuts||5.4µL||1.0µL ||1.0µL ||3.0µL ||3.0µL ||16.6µL ||30µL | ||
+ | |- | ||
+ | |NC||0.3µL ||0µL ||0µL ||1.0µL ||1.0µL ||7.7µL ||10µL | ||
+ | |} | ||
+ | {| class="wikitable" | ||
+ | !9/22 RBS-GFP-DT||XbaI ||PstI || buffer||BSA||MilliQ||total | ||
+ | |- | ||
+ | |2cuts||3.8µL||1.0µL ||1.0µL ||3.0µL ||3.0µL ||18.2µL ||30µL | ||
+ | |- | ||
+ | |NC||0.2µL ||0µL ||0µL ||1.0µL ||1.0µL ||7.8µL ||10µL | ||
+ | |} | ||
+ | |||
+ | ===Ligation=== | ||
+ | <div class="experiment"> | ||
+ | <span class="author">Nakamoto</span> | ||
+ | {| class="wikitable" | ||
+ | !state||colspan="2"|Vector||colspan="2"|Inserter||Ligation High ver.2 | ||
+ | |- | ||
+ | |||9/22 aptamer12-1R-DT(EcoRI&XbaI) ||1.4 µL||9/24 Pcon-pT181attenuator(EcoRI&SpeI)||26 µL||3.5 µL | ||
+ | |- | ||
+ | |||9/4 Ptet(SpeI&PstI)||2.0 µL||9/21 RBS-GFP-DT(XbaI&PstI)||9.0 µL||3.5 µL | ||
+ | |} | ||
+ | </div> | ||
+ | *incubated at 37 °C for 1 hour. | ||
+ | </div> | ||
+ | |||
+ | ===colony PCR=== | ||
+ | <div class="experiment"> | ||
+ | <span class="author">Kojima</span> | ||
+ | {| class="wikitable" | ||
+ | !Sample||base pair | ||
+ | |- | ||
+ | |9/23 Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 5||2042bp | ||
+ | |- | ||
+ | |9/23 Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 6||2042bp | ||
+ | |- | ||
+ | |9/23 Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 7||2042bp | ||
+ | |- | ||
+ | |9/23 Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 8||2042bp | ||
+ | |- | ||
+ | |9/23 Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 9||2042bp | ||
+ | |- | ||
+ | |9/23 Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 10||2042bp | ||
+ | |- | ||
+ | |9/23 Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 11||2042bp | ||
+ | |- | ||
+ | |9/23 Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 12||2042bp | ||
+ | |- | ||
+ | |9/23 Pcon-pT181antisense-DT 9||508bp | ||
+ | |- | ||
+ | |9/23 Pcon-pT181antisense-DT 10||508bp | ||
+ | |- | ||
+ | |9/23 Pcon-pT181antisense-DT 11||508bp | ||
+ | |- | ||
+ | |9/23 Pcon-pT181antisense-DT 12||508bp | ||
+ | |- | ||
+ | |9/23 Pcon-pT181antisense-DT 13||508bp | ||
+ | |- | ||
+ | |9/24 Pcon-pT181attenuator-RBS-GFP-DT 1||1527bp | ||
+ | |- | ||
+ | |9/24 Pcon-pT181attenuator-RBS-GFP-DT 2||1527bp | ||
+ | |- | ||
+ | |9/24 Pcon-pT181attenuator-RBS-GFP-DT 3||1527bp | ||
+ | |- | ||
+ | |9/24 Pcon-pT181attenuator-RBS-GFP-DT 4||1527bp | ||
+ | |- | ||
+ | |9/24 Pcon-pT181attenuator-aptamer12-1R-DT 1||859bp | ||
+ | |- | ||
+ | |9/24 Pcon-pT181attenuator-aptamer12-1R-DT 2||859bp | ||
+ | |- | ||
+ | |9/24 Pcon-pT181attenuator-aptamer12-1R-DT 3||859bp | ||
+ | |- | ||
+ | |9/24 Pcon-pT181attenuator-aptamer12-1R-DT 4||859bp | ||
+ | |- | ||
+ | |9/24 pT181attenuator(pSB1C3) 1||390bp | ||
+ | |- | ||
+ | |9/24 pT181attenuator(pSB1C3) 2||390bp | ||
+ | |- | ||
+ | |9/24 pT181attenuator(pSB1C3) 3||390bp | ||
+ | |- | ||
+ | |9/24 pT181attenuator(pSB1C3) 4||390bp | ||
+ | |} | ||
+ | |||
+ | </div> | ||
+ | |||
+ | <div class="experiment"> | ||
+ | <span class="author">Tatsui</span> | ||
+ | {| class="wikitable" | ||
+ | !PreDenature||Denature||Annealing||Extension||cycle | ||
+ | |- | ||
+ | | 94°C|| 94°C|| 55°C|| 68°C||-- | ||
+ | |- | ||
+ | |5min||30s ||30s ||2min||30cycle | ||
+ | |} | ||
+ | </div> | ||
+ | ===Miniprep=== | ||
+ | <div class="experiment"> | ||
+ | <span class="author">No name</span> | ||
+ | {|class="wikitable" | ||
+ | !DNA||concentration[µg/mL]||260/280||260/230 | ||
+ | |- | ||
+ | |pSB1C3||183.9 ||1.91 ||1.59 | ||
+ | |- | ||
+ | |Pcon-pT181attenuator-aptamer12-1R-DT||231.7||1.82||2.35 | ||
+ | |- | ||
+ | |Plac-aptamer12-1R-DT||208.9||1.98||1.79 | ||
+ | |} | ||
+ | </div> | ||
+ | |||
+ | ===Electrophoresis=== | ||
+ | <div class="experiment"> | ||
+ | <span class="author">Nakamoto</span> | ||
+ | {| class="wikitable" | ||
+ | !Lane||Sample||Enzyme1||Enzyme2 | ||
+ | |- | ||
+ | |1kb ladder||--||-- | ||
+ | |- | ||
+ | |2||9/24 aptamer12-1R-DT||EcoRI||XbaI | ||
+ | |- | ||
+ | |3|| 9/24 aptamer12-1R-DT ||-- ||-- | ||
+ | |- | ||
+ | |4||9/24 Ptet ||SpeI ||PstI | ||
+ | |- | ||
+ | |5||9/24 Ptet ||--||-- | ||
+ | |- | ||
+ | |6||9/24 RBS-GFP-DT ||EcoRI||SpeI | ||
+ | |- | ||
+ | |7| 9/24 RBS-GFP-DT ||-- ||-- | ||
+ | |- | ||
+ | |8||9/24 Pcon-RBS-GFP-DT ||EcoRI||XbaI | ||
+ | |- | ||
+ | |8||9/24 Pcon-RBS-GFP-DT ||--||-- | ||
+ | |- | ||
+ | |9||9/24 Pcon-RBS-GFP-DT ||--||-- | ||
+ | |- | ||
+ | |10||9/24 Pcon-pT181attenuator 1 ||EcoRI||XbaI | ||
+ | |- | ||
+ | |11||9/24 Pcon-pT181attenuator 1 ||--||-- | ||
+ | |- | ||
+ | |12||9/24 RBS-GFP-DT ||XbaI||PstI | ||
+ | |- | ||
+ | |13||9/24 RBS-GFP-DT ||--||-- | ||
+ | |- | ||
+ | |14||1kb ladder | ||
+ | |} | ||
+ | [[File:Igkuxxxx.jpg]]<br> | ||
+ | |||
+ | ===Gel Extraction=== | ||
+ | <div class="experiment"> | ||
+ | <span class="author">No name</span> | ||
+ | 1<br> | ||
+ | {| class="wikitable" | ||
+ | !Lane||DNA||Enzyme1||Enzyme2 | ||
+ | |- | ||
+ | |1||1kb ladder||--||-- | ||
+ | |- | ||
+ | |2||aptamer12-1R-DT||EcoRI||XbaI | ||
+ | |-- | ||
+ | |3||aptamer12-1R-DT||EcoRI||XbaI | ||
+ | |-- | ||
+ | |4||aptamer12-1R-DT||EcoRI||XbaI | ||
+ | |-- | ||
+ | |5||-- ||-- ||-- | ||
+ | |- | ||
+ | |6||Ptet||SpeI||PstI | ||
+ | |- | ||
+ | |7||Ptet||SpeI||PstI | ||
+ | |- | ||
+ | |8||Ptet||SpeI||PstI | ||
+ | |- | ||
+ | |9||--||--||-- | ||
+ | |- | ||
+ | |10||RBS-GFP-DT||EcoRI||SpeI | ||
+ | |- | ||
+ | |11||RBS-GFP-DT||EcoRI||SpeI | ||
+ | |- | ||
+ | |12||RBS-GFP-DT||EcoRI||SpeI | ||
+ | |} | ||
+ | [[File:Igku xxxbefore.jpg]]<br> | ||
+ | [[File:Igkuxxx1-2.jpg]]<br> | ||
+ | |||
+ | {| class="wikitable" | ||
+ | !Lane||DNA||Enzyme1||Enzyme2 | ||
+ | |- | ||
+ | |1||1kb ladder||--||-- | ||
+ | |- | ||
+ | |2||Pcon-RBS-GFP-DT||EcoRI||XbaI | ||
+ | |- | ||
+ | |3||Pcon-RBS-GFP-DT||EcoRI||XbaI | ||
+ | |- | ||
+ | |4||Pcon-RBS-GFP-DT||EcoRI||XbaI | ||
+ | |- | ||
+ | |5||--||--||-- | ||
+ | |- | ||
+ | |6||Pcon-pT181attenuator||EcoRI||XbaI | ||
+ | |- | ||
+ | |7||Pcon-pT181attenuator||EcoRI||XbaI | ||
+ | |- | ||
+ | |8||Pcon-pT181attenuator||EcoRI||XbaI | ||
+ | |- | ||
+ | |9||--||--||-- | ||
+ | |- | ||
+ | |10||RBS-GFP-DT||XbaI||PstI | ||
+ | |- | ||
+ | |11||RBS-GFP-DT||XbaI||PstI | ||
+ | |- | ||
+ | |12||RBS-GFP-DT||XbaI||PstI | ||
+ | |} | ||
+ | [[File:Igkuxxxxpg]]<br> | ||
+ | [[File:Igkuxxxx2.jpg]]<br> | ||
+ | <br> | ||
+ | |||
+ | ===Electrophoresis=== | ||
+ | <div class="experiment"> | ||
+ | <span class="author">No name</span><br> | ||
+ | 1 | ||
+ | {| class="wikitable" | ||
+ | !Lane||Sample | ||
+ | |- | ||
+ | |1||1kb ladder | ||
+ | |- | ||
+ | |2||Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 5 | ||
+ | |- | ||
+ | |3||Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 6 | ||
+ | |- | ||
+ | |4||Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 7 | ||
+ | |- | ||
+ | |5||Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 8 | ||
+ | |- | ||
+ | |6||Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 9 | ||
+ | |- | ||
+ | |7||Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 10 | ||
+ | |- | ||
+ | |8||1kb ladder | ||
+ | |} | ||
+ | [[File:Igkuxxxx.jpg]]<br> | ||
+ | |||
+ | <br> | ||
+ | 2 | ||
+ | {| class="wikitable" | ||
+ | !Lane||Sample | ||
+ | |- | ||
+ | |1||1kb ladder | ||
+ | |- | ||
+ | |2||Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 11 | ||
+ | |- | ||
+ | |3||Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 12 | ||
+ | |- | ||
+ | |4||Pcon-pT181attenuator-RBS-GFP-DT 1 | ||
+ | |- | ||
+ | |5||Pcon-pT181attenuator-RBS-GFP-DT 2 | ||
+ | |- | ||
+ | |6||Pcon-pT181attenuator-RBS-GFP-DT 3 | ||
+ | |- | ||
+ | |7||Pcon-pT181attenuator-RBS-GFP-DT 4 | ||
+ | |- | ||
+ | |8||1kb ladder | ||
+ | |} | ||
+ | [[File:Igkuxxxx.jpg]]<br> | ||
+ | |||
+ | <br> | ||
+ | 3<br> | ||
+ | {| class="wikitable" | ||
+ | !Lane||Sample | ||
+ | |- | ||
+ | |1||Pcon-pT181antisense-DT 9 | ||
+ | |- | ||
+ | |2|| Pcon-pT181antisense-DT 10 | ||
+ | |- | ||
+ | |3|| Pcon-pT181antisense-DT 11 | ||
+ | |- | ||
+ | |4|| Pcon-pT181antisense-DT 12 | ||
+ | |- | ||
+ | |5|| Pcon-pT181antisense-DT 13 | ||
+ | |- | ||
+ | |6||100bp ladder | ||
+ | |- | ||
+ | |7||Pcon-pT181attenuator-aptamer12-1R-DT 1 | ||
+ | |- | ||
+ | |8|| Pcon-pT181attenuator-aptamer12-1R-DT 2 | ||
+ | |} | ||
+ | [[File:Igkuxxxx.jpg]]<br> | ||
+ | |||
+ | <br> | ||
+ | 4<br> | ||
+ | {| class="wikitable" | ||
+ | !Lane||Sample | ||
+ | |- | ||
+ | |1||Pcon-pT181attenuator-aptamer12-1R-DT 3 | ||
+ | |- | ||
+ | |2|| Pcon-pT181attenuator-aptamer12-1R-DT 4 | ||
+ | |- | ||
+ | |3|| 100bp ladder | ||
+ | |- | ||
+ | |4|| pT181attenuator(pSB1C3) 1 | ||
+ | |- | ||
+ | |5|| pT181attenuator(pSB1C3) 2 | ||
+ | |- | ||
+ | |6|| pT181attenuator(pSB1C3) 3 | ||
+ | |- | ||
+ | |7|| pT181attenuator(pSB1C3) 4 | ||
+ | |- | ||
+ | |} | ||
+ | [[File:Igkuxxxx.jpg]]<br> |
Revision as of 12:29, 26 September 2013
Sep 24
Electrophoresis
Lane | - | 1 | 9/20 Pcon-pT181aptamer12-1R-DT 1 |
---|---|---|---|
2 | 9/20 Pcon-pT181aptamer12-1R-DT 2 | ||
3 | 9/20 Pcon-pT181aptamer12-1R-DT 3 | ||
4 | 9/20 Pcon-pT181aptamer12-1R-DT 4 | ||
5 | 9/20 Pcon-pT181aptamer12-1R-DT 5 | ||
6 | 9/20 Pcon-pT181aptamer12-1R-DT 6 | ||
7 | 9/20 Pcon-pT181aptamer12-1R-DT 7 | ||
8 | 9/20 Pcon-pT181aptamer12-1R-DT 8 | ||
9 | 100bp ladder | ||
10 | 9/22 Pcon-pT181attenuator-aptamer12-1R-DT 1 | ||
11 | 9/22 Pcon-pT181attenuator-aptamer12-1R-DT 2 | ||
12 | 9/22 Pcon-pT181attenuator-aptamer12-1R-DT 3 | ||
13 | 9/22 Pcon-pT181attenuator-aptamer12-1R-DT 4 | ||
14 | 9/20 Plac-aptamer12-1R-DT 1 | ||
15 | 9/20 Plac-aptamer12-1R-DT 2 | ||
16 | 9/20 Plac-aptamer12-1R-DT 3 | ||
17 | 9/20 Plac-aptamer12-1R-DT 4 |
Transformation
Name | Sample | Competent Cells | Total | Plate | |||||
---|---|---|---|---|---|---|---|---|---|
9/23 pSB1C3-pT181attenuator | 2 µL | 20 µL | 22 µL | LB (+CP) | |||||
RBS-GFP-DT+Pcon-pT181attenuator | 2 µL | 20 µL | 22 µL | LB (+CP) | |||||
9/23 Plac-+spinach-DT | 2 µL | 20 µL | 22 µL | LB (+Amp) | |||||
9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT | 2 µL | 20 µL | 22 µL | LB (+Amp) | |||||
9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT | 2 µL | 20 µL | 22 µL | LB (+Amp) | |||||
9/23 Pcon-RBS-tetR-DT+Pcon-RBS-GFP-DT | 2 µL | 20 µL | 22 µL | LB (+Amp) | |||||
9/23 Pcon-pT181antisense-DT | 2 µL | 20 µL | 22 µL | LB (+CP) | |||||
9/23 Pcon-pT181attenuator-RBS-GFP-DT | 2 µL | 20 µL | 22 µL | LB (+CP) | |||||
9/23 Pcon-pT181attenuator-aptamer12-1R-DT | 2 µL | 20 µL | 22 µL | LB (+CP) | |||||
PUC19 | 2 µL | 20 µL | 22 µL | LB (+Amp) | |||||
Ptet-RBS-lacZα-DT | 2 µL | 20 µL | 22 µL | LB (+CP) | pSB1C3 | 2 µL | 20 µL | 22 µL | LB (+CP) |
Liquid Culture
Sample | medium |
---|---|
aptamer12-1R-DT(Master plate) | LB(+CP) |
Transformation
Name | Sample | Competent Cells | Total | Plate |
---|---|---|---|---|
9/23 Pcon-attenuator-aptamer12-1R-DT | 2 µL | 20 µL | 22 µL | LB (+CP) |
9/23 pT181attenuator(1C3) | 2 µL | 20 µL | 22 µL | LB (+CP) |
9/23 Pcon-pT181antisense-DT | 2 µL | 20 µL | 22 µL | LB (+CP) |
9/23 Pcon-pT181attenuator-RBS--GFP-DT | 2 µL | 20 µL | 22 µL | LB (+CP) |
Liquid Culture
Sample | medium |
---|---|
pSB1C3 (Master plate-1) | LB(+CP) |
Digestion
8/21 pT181attenuator (330 µg/mL) | XbaI | PstI | buffer | BSA | MilliQ | total | |
---|---|---|---|---|---|---|---|
2 cuts | 6.1 | 1 | 1 | 3 | 3 | 15.9 | 30 |
NC | 0.3 | 0 | 0 | 1 | 1 | 7.7 | 10 |
9/22 Pcon-pT181attenuator (368.3 µg/mL) | EcoRI | SpeI | buffer | BSA | MilliQ | total | |
---|---|---|---|---|---|---|---|
2 cuts | 5.4 | 1 | 1 | 3 | 0 | 19.6 | 30 |
NC | 0.3 | 0 | 0 | 1 | 0 | 8.7 | 10 |
9/16 pSB1C3 | EcoRI | SpeI | buffer | BSA | MilliQ | total | |
---|---|---|---|---|---|---|---|
2 cuts | 18 | 1 | 1 | 3 | 0 | 7.0 | 30 |
NC | 0.9 | 0 | 0 | 1 | 0 | 8.1 | 10 |
Electrophoresis
Lane | Sample | Enzyme1 | Enzyme2 |
---|---|---|---|
1 | 1kb ladder | - | - |
2 | pT181attenuator | XbaI | PstI |
3 | pT181attenuator | -- | -- |
4 | Pcon-pT181attenuator | EcoRI | SpeI |
5 | Pcon-pT181attenuator | -- | -- |
6 | pSB1C3 | EcoRI | SpeI |
7 | pSB1C3 | -- | -- |
Miniprep
DNA | concentration[µg/mL] | 260/280 | 260/230 |
---|---|---|---|
9/24 aptamer12-1R-DT | 144.7 | 1.03 | 1.21 |
Gel Extraction
Lane | DNA | Enzyme | |
---|---|---|---|
1 | 100kb ladder | -- | -- |
2 | pT181attenuator | XbaI | PstI |
3 | pT181attenuator | XbaI | PstI |
4 | pT181attenuator | XbaI | PstI |
5 | -- | -- | -- |
6 | Pcon-pT181attenuator | EcoRI | SpeI |
7 | Pcon-pT181attenuator | EcoRI | SpeI |
8 | Pcon-pT181attenuator | EcoRI | SpeI |
9 | -- | -- | -- |
10 | pSB1C3 | EcoRI | SpeI |
11 | pSB1C3 | EcoRI | SpeI |
12 | pSB1C3 | EcoRI | SpeI |
File:Igkuxxx.jpg
File:Igku Axxxjpg
Name | concentration[µg/mL] | 260/280 | 260/230 |
---|---|---|---|
pT181attenuator(XbaI&PstI) | 10.1 | 2.02 | 0.43 |
Pcon-pT181attenuator(EcoRI&SpeI) | 10.3 | 1.81 | 0.32 |
pSB1C3(EcoRI&SpeI) | 10.0 | 2.81 | 0.02 |
Colony PCR
Sample | base pair |
---|---|
9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 1 | 1414 |
9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 2 | 1414 |
9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 3 | 1414 |
9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 4 | 1414 |
9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 5 | 1414 |
9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 6 | 1414 |
9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 7 | 1414 |
9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 8 | 1414 |
9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 1 | 1631 |
9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 2 | 1631 |
9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 3 | 1631 |
9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 4 | 1631 |
9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 5 | 1631 |
9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 6 | 1631 |
9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 7 | 1631 |
9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 8 | 1631 |
9/23 Pcon-RBS-tetR-DT+Pcon-RBS-GFP-DT 1 | 2042 |
9/23 Pcon-RBS-tetR-DT+Pcon-RBS-GFP-DT 2 | 2042 |
9/23 Pcon-RBS-tetR-DT+Pcon-RBS-GFP-DT 3 | 2042 |
9/23 Pcon-RBS-tetR-DT+Pcon-RBS-GFP-DT 4 | 2042 |
9/23 Pcon-pT181antisense-DT 1 | 508 |
9/23 Pcon-pT181antisense-DT 2 | 508 |
9/23 Pcon-pT181antisense-DT 3 | 508 |
9/23 Pcon-pT181antisense-DT 4 | 508 |
9/23 Pcon-pT181antisense-DT 5 | 508 |
9/23 Pcon-pT181antisense-DT 6 | 508 |
9/23 Pcon-pT181antisense-DT 7 | 508 |
9/23 Pcon-pT181antisense-DT 8 | 508 |
PreDenature | Denature | Annealing | Extension | cycle |
---|---|---|---|---|
94 °C | 94 °C | 55 °C | 68 °C | -- |
5 min | 30 sec | 30 sec | 2min | 30 cycles |
Lane | Sample |
---|---|
1 | 9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 1 |
2 | 9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 2 |
3 | 9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 3 |
4 | 9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 4 |
5 | 9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 5 |
6 | 9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 6 |
7 | 9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 7 |
8 | 9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 8 |
9 | 1kb ladder |
10 | 9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 1 |
11 | 9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 2 |
12 | 9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 3 |
13 | 9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 4 |
14 | 9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 5 |
15 | 9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 6 |
16 | 9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 7 |
17 | 9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 8 |
File:Igkuxxxx.png
</div>
Lane | Sample |
---|---|
1 | 9/23 Pcon-RBS-tetR-DT+Pcon-RBS-GFP-DT 1 |
2 | 9/23 Pcon-RBS-tetR-DT+Pcon-RBS-GFP-DT 2 |
3 | 9/23 Pcon-RBS-tetR-DT+Pcon-RBS-GFP-DT 3 |
4 | 9/23 Pcon-RBS-tetR-DT+Pcon-RBS-GFP-DT 4 |
5 | 9/23 Pcon-pT181antisense-DT 1 |
6 | 9/23 Pcon-pT181antisense-DT 2 |
7 | 1kb ladder |
8 | 9/23 Pcon-pT181antisense-DT 3 |
9 | 9/23 Pcon-pT181antisense-DT 4 |
10 | 9/23 Pcon-pT181antisense-DT 5 |
11 | 9/23 Pcon-pT181antisense-DT 6 |
12 | 9/23 Pcon-pT181antisense-DT 7 |
13 | 9/23 Pcon-pT181antisense-DT 8 |
14 | -- |
File:Igkuxxxx.png
</div>
Restriction Enzyme Digestion
9/24 aptamer12-1R-DT | EcoRI | XbaI | buffer | BSA | MilliQ | total | |
---|---|---|---|---|---|---|---|
2cuts | 17.5µL | 1.0µL | 1.0µL | 3.0µL | 3.0µL | 4.5µL | 30µL |
NC | 0.9µL | 0µL | 0µL | 1.0µL | 1.0µL | 7.1µL | 10µL |
9/20 Ptet | SpeI | PstI | buffer | BSA | MilliQ | total | |
---|---|---|---|---|---|---|---|
2cuts | 9.5µL | 1.0µL | 1.0µL | 3.0µL | 0µL | 15.5µL | 30µL |
NC | 0.5µL | 0µL | 0µL | 1.0µL | 0µL | 8.5µL | 10µL |
9/22 RBS-GFP-DT | EcoRI | SpeI | buffer | BSA | MilliQ | total | |
---|---|---|---|---|---|---|---|
2cuts | 3.8µL | 1.0µL | 1.0µL | 3.0µL | 0µL | 21.2µL | 30µL |
NC | 0.2µL | 0µL | 0µL | 1.0µL | 0µL | 8.8µL | 10µL |
9/22 Pcon-RBS-GFP-DT | EcoRI | XbaI | buffer | BSA | MilliQ | total | |
---|---|---|---|---|---|---|---|
2cuts | 2.4µL | 1.0µL | 1.0µL | 3.0µL | 3.0µL | 19.6µL | 30µL |
NC | 0.1µL | 0µL | 0µL | 1.0µL | 1.0µL | 7.9µL | 10µL |
9/22 Pcon-pT181attenuator 1 | EcoRI | XbaI | buffer | BSA | MilliQ | total | |
---|---|---|---|---|---|---|---|
2cuts | 5.4µL | 1.0µL | 1.0µL | 3.0µL | 3.0µL | 16.6µL | 30µL |
NC | 0.3µL | 0µL | 0µL | 1.0µL | 1.0µL | 7.7µL | 10µL |
9/22 RBS-GFP-DT | XbaI | PstI | buffer | BSA | MilliQ | total | |
---|---|---|---|---|---|---|---|
2cuts | 3.8µL | 1.0µL | 1.0µL | 3.0µL | 3.0µL | 18.2µL | 30µL |
NC | 0.2µL | 0µL | 0µL | 1.0µL | 1.0µL | 7.8µL | 10µL |
Ligation
state | Vector | Inserter | Ligation High ver.2 | ||
---|---|---|---|---|---|
9/22 aptamer12-1R-DT(EcoRI&XbaI) | 1.4 µL | 9/24 Pcon-pT181attenuator(EcoRI&SpeI) | 26 µL | 3.5 µL | |
9/4 Ptet(SpeI&PstI) | 2.0 µL | 9/21 RBS-GFP-DT(XbaI&PstI) | 9.0 µL | 3.5 µL |
- incubated at 37 °C for 1 hour.
colony PCR
Sample | base pair |
---|---|
9/23 Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 5 | 2042bp |
9/23 Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 6 | 2042bp |
9/23 Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 7 | 2042bp |
9/23 Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 8 | 2042bp |
9/23 Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 9 | 2042bp |
9/23 Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 10 | 2042bp |
9/23 Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 11 | 2042bp |
9/23 Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 12 | 2042bp |
9/23 Pcon-pT181antisense-DT 9 | 508bp |
9/23 Pcon-pT181antisense-DT 10 | 508bp |
9/23 Pcon-pT181antisense-DT 11 | 508bp |
9/23 Pcon-pT181antisense-DT 12 | 508bp |
9/23 Pcon-pT181antisense-DT 13 | 508bp |
9/24 Pcon-pT181attenuator-RBS-GFP-DT 1 | 1527bp |
9/24 Pcon-pT181attenuator-RBS-GFP-DT 2 | 1527bp |
9/24 Pcon-pT181attenuator-RBS-GFP-DT 3 | 1527bp |
9/24 Pcon-pT181attenuator-RBS-GFP-DT 4 | 1527bp |
9/24 Pcon-pT181attenuator-aptamer12-1R-DT 1 | 859bp |
9/24 Pcon-pT181attenuator-aptamer12-1R-DT 2 | 859bp |
9/24 Pcon-pT181attenuator-aptamer12-1R-DT 3 | 859bp |
9/24 Pcon-pT181attenuator-aptamer12-1R-DT 4 | 859bp |
9/24 pT181attenuator(pSB1C3) 1 | 390bp |
9/24 pT181attenuator(pSB1C3) 2 | 390bp |
9/24 pT181attenuator(pSB1C3) 3 | 390bp |
9/24 pT181attenuator(pSB1C3) 4 | 390bp |
PreDenature | Denature | Annealing | Extension | cycle |
---|---|---|---|---|
94°C | 94°C | 55°C | 68°C | -- |
5min | 30s | 30s | 2min | 30cycle |
Miniprep
DNA | concentration[µg/mL] | 260/280 | 260/230 |
---|---|---|---|
pSB1C3 | 183.9 | 1.91 | 1.59 |
Pcon-pT181attenuator-aptamer12-1R-DT | 231.7 | 1.82 | 2.35 |
Plac-aptamer12-1R-DT | 208.9 | 1.98 | 1.79 |
Electrophoresis
Lane | Sample | Enzyme1 | Enzyme2 |
---|---|---|---|
1kb ladder | -- | -- | |
2 | 9/24 aptamer12-1R-DT | EcoRI | XbaI |
3 | 9/24 aptamer12-1R-DT | -- | -- |
4 | 9/24 Ptet | SpeI | PstI |
5 | 9/24 Ptet | -- | -- |
6 | 9/24 RBS-GFP-DT | EcoRI | SpeI |
9/24 RBS-GFP-DT | -- | -- | |
8 | 9/24 Pcon-RBS-GFP-DT | EcoRI | XbaI |
8 | 9/24 Pcon-RBS-GFP-DT | -- | -- |
9 | 9/24 Pcon-RBS-GFP-DT | -- | -- |
10 | 9/24 Pcon-pT181attenuator 1 | EcoRI | XbaI |
11 | 9/24 Pcon-pT181attenuator 1 | -- | -- |
12 | 9/24 RBS-GFP-DT | XbaI | PstI |
13 | 9/24 RBS-GFP-DT | -- | -- |
14 | 1kb ladder |
Gel Extraction
Lane | DNA | Enzyme1 | Enzyme2 |
---|---|---|---|
1 | 1kb ladder | -- | -- |
2 | aptamer12-1R-DT | EcoRI | XbaI |
3 | aptamer12-1R-DT | EcoRI | XbaI |
4 | aptamer12-1R-DT | EcoRI | XbaI |
5 | -- | -- | -- |
6 | Ptet | SpeI | PstI |
7 | Ptet | SpeI | PstI |
8 | Ptet | SpeI | PstI |
9 | -- | -- | -- |
10 | RBS-GFP-DT | EcoRI | SpeI |
11 | RBS-GFP-DT | EcoRI | SpeI |
12 | RBS-GFP-DT | EcoRI | SpeI |
File:Igku xxxbefore.jpg
File:Igkuxxx1-2.jpg
Lane | DNA | Enzyme1 | Enzyme2 |
---|---|---|---|
1 | 1kb ladder | -- | -- |
2 | Pcon-RBS-GFP-DT | EcoRI | XbaI |
3 | Pcon-RBS-GFP-DT | EcoRI | XbaI |
4 | Pcon-RBS-GFP-DT | EcoRI | XbaI |
5 | -- | -- | -- |
6 | Pcon-pT181attenuator | EcoRI | XbaI |
7 | Pcon-pT181attenuator | EcoRI | XbaI |
8 | Pcon-pT181attenuator | EcoRI | XbaI |
9 | -- | -- | -- |
10 | RBS-GFP-DT | XbaI | PstI |
11 | RBS-GFP-DT | XbaI | PstI |
12 | RBS-GFP-DT | XbaI | PstI |
File:Igkuxxxxpg
File:Igkuxxxx2.jpg
Electrophoresis
1
Lane | Sample |
---|---|
1 | 1kb ladder |
2 | Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 5 |
3 | Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 6 |
4 | Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 7 |
5 | Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 8 |
6 | Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 9 |
7 | Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 10 |
8 | 1kb ladder |
2
Lane | Sample |
---|---|
1 | 1kb ladder |
2 | Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 11 |
3 | Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 12 |
4 | Pcon-pT181attenuator-RBS-GFP-DT 1 |
5 | Pcon-pT181attenuator-RBS-GFP-DT 2 |
6 | Pcon-pT181attenuator-RBS-GFP-DT 3 |
7 | Pcon-pT181attenuator-RBS-GFP-DT 4 |
8 | 1kb ladder |
3
Lane | Sample |
---|---|
1 | Pcon-pT181antisense-DT 9 |
2 | Pcon-pT181antisense-DT 10 |
3 | Pcon-pT181antisense-DT 11 |
4 | Pcon-pT181antisense-DT 12 |
5 | Pcon-pT181antisense-DT 13 |
6 | 100bp ladder |
7 | Pcon-pT181attenuator-aptamer12-1R-DT 1 |
8 | Pcon-pT181attenuator-aptamer12-1R-DT 2 |
4
Lane | Sample |
---|---|
1 | Pcon-pT181attenuator-aptamer12-1R-DT 3 |
2 | Pcon-pT181attenuator-aptamer12-1R-DT 4 |
3 | 100bp ladder |
4 | pT181attenuator(pSB1C3) 1 |
5 | pT181attenuator(pSB1C3) 2 |
6 | pT181attenuator(pSB1C3) 3 |
7 | pT181attenuator(pSB1C3) 4 |