Team:Heidelberg/Templates/Del week14 AF

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(Difference between revisions)
(Created page with "==29-07-2013== ===Restriction digest of fragment FS_02 to FS_05; 11.2 kb; 27-07-2013 with BglII=== [[File:20130729restrictiondigest 2log FS02-FS03 FS02-FS05...")
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==29-07-2013==
==29-07-2013==
===Restriction digest of fragment FS_02 to FS_05; 11.2 kb; [[DelA-F#27-07-2013|27-07-2013]] with BglII===
===Restriction digest of fragment FS_02 to FS_05; 11.2 kb; [[DelA-F#27-07-2013|27-07-2013]] with BglII===
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[[File:20130729restrictiondigest 2log FS02-FS03 FS02-FS05 FS08-FS23besch.png|150px|thumb|Test restriction digest (29.07); run at 100 V, 0.8 % gel (TAE)]]
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[[File:Heidelberg_20130729restrictiondigest 2log FS02-FS03 FS02-FS05 FS08-FS23besch.png|150px|thumb|Test restriction digest (29.07); run at 100 V, 0.8 % gel (TAE)]]
Incubation at 37°C for about 3 hours  
Incubation at 37°C for about 3 hours  
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==30-07-2013==
==30-07-2013==
===Amplification from FS_02 to FS_05; 11.2 kb===
===Amplification from FS_02 to FS_05; 11.2 kb===
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[[File:20130730 2log FS2-26.200nMor400nM65°Cconst FS2-26.200or400nM.68°Ctd 2xFS02-05200nM65const 2xFS02-05400nM65const.png|150px|thumb|Amplification of Del A-G under different conditions and DelAF; run at 100 V 0.8% agarose gel (TAE)]]
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[[File:Heidelberg_20130730 2log FS2-26.200nMor400nM65°Cconst FS2-26.200or400nM.68°Ctd 2xFS02-05200nM65const 2xFS02-05400nM65const.png|150px|thumb|Amplification of Del A-G under different conditions and DelAF; run at 100 V 0.8% agarose gel (TAE)]]
2 reactions 200nM/400nM Primers
2 reactions 200nM/400nM Primers
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! what !!  µL 2nd PCR  
! what !!  µL 2nd PCR  
|-
|-
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| ''D. acidovorans'' || 1
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| ''D. acidovorans'' DSM-39|| 1
|-
|-
| FS_02 (1/10) || 5/2.5
| FS_02 (1/10) || 5/2.5

Revision as of 01:45, 30 September 2013

Contents

29-07-2013

Restriction digest of fragment FS_02 to FS_05; 11.2 kb; 27-07-2013 with BglII

Test restriction digest (29.07); run at 100 V, 0.8 % gel (TAE)

Incubation at 37°C for about 3 hours

what µL
FS_02 to FS_05 (27-07-2013) 15
BglII 1
Buffer 3.1 2
dd H2O 2

Results:

  • Test restriction digest worked out as predicted

30-07-2013

Amplification from FS_02 to FS_05; 11.2 kb

Amplification of Del A-G under different conditions and DelAF; run at 100 V 0.8% agarose gel (TAE)

2 reactions 200nM/400nM Primers

Reaction
what µL 2nd PCR
D. acidovorans DSM-39 1
FS_02 (1/10) 5/2.5
FS_05 (1/10) 5/2.5
Phusion Master Mix 25
DMSO 2.5
dd H2O 11.5/16.5
Conditions
Biorad MyCycler*
Cycles-PCR temperature [°C] Time [s]
1 98 10
12 98 1
68 ↓ 0.5 5
72 3 min
18 98 1
66 5
72 3 min
1 72 10 min
1 4 inf

Results:

  • Amplification did not work properly, as there were several unspecific bands. However we still had product.
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