Team:UNITN-Trento/Notebook/Labposts/08/54

From 2013.igem.org

(Difference between revisions)
(Created page with "{ "date" : "2013-08-01", "author" : "gabriele", "title" : "pLAC to SAMsynthetase - Ep. III", "content" : "<html>I miniprepped the eight inocula from yesterday (great yields, ...")
 
Line 1: Line 1:
{
{
-
"date" : "2013-08-01",
+
"date" : "2013-08-30",
-
"author" : "gabriele",
+
"author" : "fabio",
-
"title" : "pLAC to SAMsynthetase - Ep. III",
+
"title" : " <html> new experiments on blue light induction: great!!! </html> ",
-
"content" : "<html>I miniprepped the eight inocula from yesterday (great yields, the minimum was 206.3 ng/&micro;l) and screened them with EcoRI-HF and PstI-HF. Five inocula (11A-C, 12B-C-D) were positive!!!</html>{{:Team:UNITN-Trento/Templates/Styles/Spoiler|Agarose Gel|<html><table><tr><th>Loading scheme</th></tr><tr><td>11A</td></tr><tr><td>11B</td></tr><tr><td>11C</td></tr><tr><td>11D</td></tr><tr><td><i>Empty</i></td></tr><tr><td>1kb ladder</td></tr><tr><td><i>Empty</i></td></tr><tr><td>12A</td></tr><tr><td>12B</td></tr><tr><td>12C</td></tr><tr><td>12D</td></tr></table><img src=\"https://static.igem.org/mediawiki/2013/4/42/Tn-20130801_ggcm_SAMsynthINpSB1C3withPlac_GOTITfuckyeah.jpg\" /></html>}}<html>One sample was sent to be sequenced.</html>",
+
"content" : " <html> In these days I tried so many times to induce transformed cells in order to have great, clean, results, and finally I found the key: I developed a standard procedure that allowed me to see difference between samples. I transformed NEB10b cells with the entire construct (first I tested different strains of E. coli in order to see which strain had the best behavior and noticed that NEB10b cells work better than any other). Then I made some inocula O/N using LB broth (I also tried to compere LB broth to M9 minimal medium, but I didn’t see any difference in the outcome) and diluted the next morning in 20 ml of liquid broth (1:50) waiting until they reached OD = 0.7. The thing is, cultures grew really slowly, in fact they reached the required concentration after 6-8 hours. Then I split them into 5ml samples that I exposed to different condition. The first time that I performed this experiment I tested different light sources in order to establish the most powerful inducing condition: I used blue LEDs, a blue bulb light and normal white light. I finally picked out the LED and the normal light for further experiments.  Now let’s go back to the different samples!! I used glass tubes for overnight induction, heating the samples at 37 degrees with stirring. Previously I tested different materials (glass and plastic) tubes and different temperatures conditions: the best way to grow my bacteria was definitely in glass at 37 degrees. I put one sample in the dark wrapping it up with an aluminum foil and placed under a box to be sure that no light could pass. The second sample was illuminated using a blue LED. Instead the third one was exposed to normal white light because I previously saw that even white light induces the circuit. Experiments lasted all night long and everytime I saw the results in the morning. Finally I got my results right in front of my eyes: the dark control in almost every experiments didn’t show any sign of amilCP production. At the other hand the other two samples were blue.  To obtain quantitative measurements I used the spectrometer. First I diluted the pellets in 2 ml of PBS and then sonicated the samples for 10 seconds. Fluorescence spectra reveals what we already got from visual results. Great!!</html> ",
-
"tags" : "SAMsynthetase-pLac"
+
"tags" : "blue_light"
}
}

Latest revision as of 09:17, 3 October 2013

{ "date" : "2013-08-30", "author" : "fabio", "title" : " new experiments on blue light induction: great!!! ", "content" : " In these days I tried so many times to induce transformed cells in order to have great, clean, results, and finally I found the key: I developed a standard procedure that allowed me to see difference between samples. I transformed NEB10b cells with the entire construct (first I tested different strains of E. coli in order to see which strain had the best behavior and noticed that NEB10b cells work better than any other). Then I made some inocula O/N using LB broth (I also tried to compere LB broth to M9 minimal medium, but I didn’t see any difference in the outcome) and diluted the next morning in 20 ml of liquid broth (1:50) waiting until they reached OD = 0.7. The thing is, cultures grew really slowly, in fact they reached the required concentration after 6-8 hours. Then I split them into 5ml samples that I exposed to different condition. The first time that I performed this experiment I tested different light sources in order to establish the most powerful inducing condition: I used blue LEDs, a blue bulb light and normal white light. I finally picked out the LED and the normal light for further experiments. Now let’s go back to the different samples!! I used glass tubes for overnight induction, heating the samples at 37 degrees with stirring. Previously I tested different materials (glass and plastic) tubes and different temperatures conditions: the best way to grow my bacteria was definitely in glass at 37 degrees. I put one sample in the dark wrapping it up with an aluminum foil and placed under a box to be sure that no light could pass. The second sample was illuminated using a blue LED. Instead the third one was exposed to normal white light because I previously saw that even white light induces the circuit. Experiments lasted all night long and everytime I saw the results in the morning. Finally I got my results right in front of my eyes: the dark control in almost every experiments didn’t show any sign of amilCP production. At the other hand the other two samples were blue. To obtain quantitative measurements I used the spectrometer. First I diluted the pellets in 2 ml of PBS and then sonicated the samples for 10 seconds. Fluorescence spectra reveals what we already got from visual results. Great!! ", "tags" : "blue_light" }