Team:Groningen/protocols/biofilm media

From 2013.igem.org

(Difference between revisions)
Line 22: Line 22:
<div class="mainContent">
<div class="mainContent">
-
 
+
Make an overnight culture of the strains of interest in LB broth.
-
<br>Grow the strains overnight at 37°C on LB broth.  
+
<br>1 ml of the O/N culture is required for every 10 ml of Sgg medium (2x SG supplemented with 1% [wt/vol] glycerol).
-
<br>Use 1 ml of liquid culture for every 10 ml 2x Sgg medium to inoculate every 10 ml 2x Sgg.
+
<br>This will be incubated at 27&deg;C for 5 days.
-
<br>Iincubated at 27&deg;C for 5 days.
+
-
<br> Sgg is 2x SG supplemented with 1% [wt/vol] glycerol.
+
-
<br></br>
+
-
<br></br>
+
-
 
+
<h5>Media for macrocolony formation</h5>
<h5>Media for macrocolony formation</h5>
-
 
+
<H5>2x SG medium (100 mL)</H5>
-
<br><H5>2x SG medium (100 mL)</H5>
+
<table id="normal" width="60%">
-
<table id="normal">
+
   <tr>
   <tr>
     <th>compound</th>
     <th>compound</th>
Line 43: Line 37:
   <tr>
   <tr>
     <td>Nutrient broth (Difco)</td>
     <td>Nutrient broth (Difco)</td>
-
     <td ALIGN=CENTER>1.6 g</td>
+
     <td>1.6 g</td>
     <td></td>
     <td></td>
   </tr>
   </tr>
Line 49: Line 43:
   <tr>
   <tr>
     <td>KCl</td>
     <td>KCl</td>
-
     <td ALIGN=CENTER>0.2 g</td>
+
     <td>0.2 g</td>
     <td></td>
     <td></td>
   </tr>
   </tr>
Line 55: Line 49:
   <tr>
   <tr>
     <td>MgSO<sub>4</sub>.7H<sub>2</sub>O </td>
     <td>MgSO<sub>4</sub>.7H<sub>2</sub>O </td>
-
     <td ALIGN=CENTER>0.05 g</td>
+
     <td>0.05 g</td>
     <td></td>
     <td></td>
   </tr>
   </tr>
Line 61: Line 55:
   <tr>
   <tr>
     <td>agar</td>
     <td>agar</td>
-
     <td ALIGN=CENTER>1.5 g</td>
+
     <td>1.5 g</td>
-
     <td> </td>
+
     <td></td>
   </tr>
   </tr>
<tr>
<tr>
     <td></td>
     <td></td>
-
     <td ALIGN=CENTER></td>
+
     <td></td>
     <td> add everything together and autoclave</td>
     <td> add everything together and autoclave</td>
   </tr>
   </tr>
Line 73: Line 67:
<tr>
<tr>
     <td>Ca(NO<sub>3</sub>)<sub>2</sub>.4H<sub>2</sub>O  1 mM</td>
     <td>Ca(NO<sub>3</sub>)<sub>2</sub>.4H<sub>2</sub>O  1 mM</td>
-
     <td ALIGN=CENTER>0.1 mL</td>
+
     <td>0.1 mL</td>
-
     <td> </td>
+
     <td></td>
   </tr>
   </tr>
<tr>
<tr>
     <td>MnCl<sub>2</sub>.4H<sub>2</sub>O 0.1 mM</td>
     <td>MnCl<sub>2</sub>.4H<sub>2</sub>O 0.1 mM</td>
-
     <td ALIGN=CENTER>0.1 mL</td>
+
     <td>0.1 mL</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
Line 85: Line 79:
<tr>
<tr>
     <td>FeSO<sub>4</sub>  1 &micro;M</td>
     <td>FeSO<sub>4</sub>  1 &micro;M</td>
-
     <td ALIGN=CENTER>0.1 mL</td>
+
     <td>0.1 mL</td>
-
     <td> </td>
+
     <td></td>
   </tr>
   </tr>
<tr>
<tr>
     <td>0.1% glucose </td>
     <td>0.1% glucose </td>
-
     <td ALIGN=CENTER>0.5 mL</td>
+
     <td>0.5 mL</td>
-
     <td> </td>
+
     <td></td>
   </tr>
   </tr>
</table>  
</table>  
Line 99: Line 93:
<br><H5>LB/Mn/glucose medium (100 mL)</H5>
<br><H5>LB/Mn/glucose medium (100 mL)</H5>
-
<table id="normal">
+
<table id="normal" width="60%">
   <tr>
   <tr>
     <th>compound</th>
     <th>compound</th>
Line 108: Line 102:
   <tr>
   <tr>
     <td>LB/ 1.5% agar</td>
     <td>LB/ 1.5% agar</td>
-
     <td ALIGN=CENTER>100 ml</td>
+
     <td>100 ml</td>
     <td>autoclave</td>
     <td>autoclave</td>
   </tr>
   </tr>
Line 114: Line 108:
<tr>
<tr>
     <td>MnCl<sub>2</sub>.4H<sub>2</sub>O  0.1 mM</td>
     <td>MnCl<sub>2</sub>.4H<sub>2</sub>O  0.1 mM</td>
-
     <td ALIGN=CENTER>0.1mL</td>
+
     <td>0.1mL</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
Line 120: Line 114:
<tr>
<tr>
     <td>0.1% glucose </td>
     <td>0.1% glucose </td>
-
     <td ALIGN=CENTER>0.5 mL</td>
+
     <td>0.5 mL</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
Line 129: Line 123:
<br><H5> MSgg medium (100 mL)</H5>
<br><H5> MSgg medium (100 mL)</H5>
-
<table id="normal">
+
<table id="normal" width="60%">
   <tr>
   <tr>
     <th>compound</th>
     <th>compound</th>
Line 138: Line 132:
   <tr>
   <tr>
     <td>KH<sub>2</sub>PO<sub>4</sub></td>
     <td>KH<sub>2</sub>PO<sub>4</sub></td>
-
     <td ALIGN=CENTER>0.026 g</td>
+
     <td>0.026 g</td>
     <td></td>
     <td></td>
   </tr>
   </tr>
<tr>
<tr>
     <td>K<sub>2</sub>HPO<sub>4</sub></td>
     <td>K<sub>2</sub>HPO<sub>4</sub></td>
-
     <td ALIGN=CENTER>0.061 g</td>
+
     <td>0.061 g</td>
     <td></td>
     <td></td>
   </tr>
   </tr>
Line 149: Line 143:
   <tr>
   <tr>
     <td>MOPS 100 mM</td>
     <td>MOPS 100 mM</td>
-
     <td ALIGN=CENTER>2.09 g</td>
+
     <td>2.09 g</td>
     <td></td>
     <td></td>
   </tr>
   </tr>
Line 155: Line 149:
   <tr>
   <tr>
     <td>MgCl<sub>2</sub>.6H<sub>2</sub>O  2 mM</td>
     <td>MgCl<sub>2</sub>.6H<sub>2</sub>O  2 mM</td>
-
     <td ALIGN=CENTER>0.04 g</td>
+
     <td>0.04 g</td>
     <td></td>
     <td></td>
   </tr>
   </tr>
Line 161: Line 155:
   <tr>
   <tr>
     <td>agar</td>
     <td>agar</td>
-
     <td ALIGN=CENTER>1.5 g</td>
+
     <td>1.5 g</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
Line 167: Line 161:
<tr>
<tr>
     <td></td>
     <td></td>
-
     <td ALIGN=CENTER></td>
+
     <td></td>
     <td>add everything together and autoclave</td>
     <td>add everything together and autoclave</td>
   </tr>
   </tr>
Line 173: Line 167:
<tr>
<tr>
     <td>CaCl<sub>2</sub>  700 mM</td>
     <td>CaCl<sub>2</sub>  700 mM</td>
-
     <td ALIGN=CENTER>0.1 mL</td>
+
     <td>0.1 mL</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
Line 179: Line 173:
<tr>
<tr>
     <td>MnCl<sub>2</sub> 50 &micro;M</td>
     <td>MnCl<sub>2</sub> 50 &micro;M</td>
-
     <td ALIGN=CENTER>50 &micro;L</td>
+
     <td>50 &micro;L</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
Line 185: Line 179:
<tr>
<tr>
     <td>FeCl<sub>3</sub>  50 &micro;M</td>
     <td>FeCl<sub>3</sub>  50 &micro;M</td>
-
     <td ALIGN=CENTER>0.1 mL</td>
+
     <td>0.1 mL</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
Line 191: Line 185:
<tr>
<tr>
     <td>ZnCl<sub>2</sub> 1 &micro;M</td>
     <td>ZnCl<sub>2</sub> 1 &micro;M</td>
-
     <td ALIGN=CENTER>0.1 mL</td>
+
     <td>0.1 mL</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
Line 197: Line 191:
<tr>
<tr>
     <td>thiamine 2 &micro;M</td>
     <td>thiamine 2 &micro;M</td>
-
     <td ALIGN=CENTER>0.1 mL</td>
+
     <td>0.1 mL</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
Line 203: Line 197:
<tr>
<tr>
     <td>0.5% glycerol </td>
     <td>0.5% glycerol </td>
-
     <td ALIGN=CENTER>0.57 mL</td>
+
     <td>0.57 mL</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
Line 209: Line 203:
<tr>
<tr>
     <td>0.5% glutamate </td>
     <td>0.5% glutamate </td>
-
     <td ALIGN=CENTER>10 mL</td>
+
     <td>10 mL</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
Line 215: Line 209:
<tr>
<tr>
     <td>tryptophan </td>
     <td>tryptophan </td>
-
     <td ALIGN=CENTER>1 mL</td>
+
     <td>1 mL</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>

Revision as of 00:03, 5 October 2013

Make an overnight culture of the strains of interest in LB broth.
1 ml of the O/N culture is required for every 10 ml of Sgg medium (2x SG supplemented with 1% [wt/vol] glycerol).
This will be incubated at 27°C for 5 days.
Media for macrocolony formation
2x SG medium (100 mL)
compound amount treatment
Nutrient broth (Difco) 1.6 g
KCl 0.2 g
MgSO4.7H2O 0.05 g
agar 1.5 g
add everything together and autoclave
Ca(NO3)2.4H2O 1 mM 0.1 mL
MnCl2.4H2O 0.1 mM 0.1 mL
FeSO4 1 µM 0.1 mL
0.1% glucose 0.5 mL

LB/Mn/glucose medium (100 mL)
compound amount treatment
LB/ 1.5% agar 100 ml autoclave
MnCl2.4H2O 0.1 mM 0.1mL
0.1% glucose 0.5 mL

MSgg medium (100 mL)
compound amount treatment
KH2PO4 0.026 g
K2HPO4 0.061 g
MOPS 100 mM 2.09 g
MgCl2.6H2O 2 mM 0.04 g
agar 1.5 g
add everything together and autoclave
CaCl2 700 mM 0.1 mL
MnCl2 50 µM 50 µL
FeCl3 50 µM 0.1 mL
ZnCl2 1 µM 0.1 mL
thiamine 2 µM 0.1 mL
0.5% glycerol 0.57 mL
0.5% glutamate 10 mL
tryptophan 1 mL