Team:SUSTC-Shenzhen-B/safety.html

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             <h1 class="ui dividing header">Safety</h1>
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             <h1 class="ui dividing header">Achievement</h1>
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             <p class="lead">Below are contens modified from iGEM Software Division Coding Practices Questionnaire</p>
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             <p class="lead">Below are requirements and our achievements.</p>
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           <a class="active item">Safety form</a>
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           <a class="active item">Bronze Medal requiement</a>
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           <a class="item">Privacy policy</a>
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           <a class="active item">Silver Medal requirement</a>
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          <a class="active item">Gold Medal requirement</a>
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         <h2 class="ui dividing header">Safety form</h2>
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         <h2 class="ui dividing header">Bronze Medal requirement</h2>
         <section id="motivation"></section>
         <section id="motivation"></section>
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        <p>To earn a Silver Medal, in addition to the Bronze Medal requirements, a team must do ONE of the following:</p>
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               <th>No</th>
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               <th>Requirement</th>
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               <th>Question</th>
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               <th>Achievement</th>
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              <th>Answer</th>
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                <td>1</td>
 
                 <td>
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                   Are you using the iGEM Software repository at github.com/igemsoftware? If you have instead stored your code elsewhere, please explain where and why you have put it there. If your code is not in the iGEM repository, are you using any version control system such as Git, CVS, or SVN?
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                   Provide a detailed, draft specification for the next version of your software tool
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                   Yes, we have uploaded our software to the iGEM Software repository.
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                   See <a href="future.html" target="_blank">future</a> part of this wiki.
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                <td>2a</td>
 
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                   Does your software store any private data supplied by the user? (For example: the user's name and email address, passwords, DNA sequences, circuit designs, etc.) If yes, please describe what kind of data is stored. If no, skip the rest of this question and move on to question 3.
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                   Provide a second, distinct (yet complementary) software tools project.
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                   Yes, our software stores user's name, e-mail address, passwords, experiment data and circuit designs supplied by the users. It also stores chat records between users. But people can choose to open their e-mail address，experiment data and circuit designs to the public. And we advocate this.
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                   We have put <a href="clotho.html" target="_blank">Circuit List</a>, which is Clotho verion of Circuit+.
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                <td>2b</td>
 
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                   What is the URL or IP address where the user's private data is stored? Where is the physical computer or hard drive that contains the user's private data?
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                   Provide a demonstration of their software either as a textual or video tutorial made available on their wiki. This tutorial should explain all the features of the tool as well as provide sample input and output as appropriate.
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                   Our website is <a href="http://circuitplus.org/" target="_blank">http://circuitplus.org/</a>. Our database is stored in the Internet. For the place of user's private data, there is a file that stores all data of one certain user's information. The URL is not final defined yet. But it would be ordered perfectly. We will upload a text file (.txt) to define all URL after the software is completed. And for the local data, users can set the file path and store data both on the Internet and physical computer.
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                   See <a href="tutorial.html" target="_blank">tutorial</a> part of this wiki.
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      <h2 class="ui dividing header">Bronze Medal requirement</h2>
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        <section id="motivation"></section>
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              <th>Requirement</th>
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              <th>Achievement</th>
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                <td>2c</td>
 
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                   Please describe any encryption, password protection, etc. that you use to protect the user's data. (It is not mandatory to have such protections, but if you do, describe them.)
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                   Register the team, have a great summer, and have fun attending the Jamboree.
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                   We do not store users’ password by clear-text passwords or reversible encryption. Meanwhile, we use the prevailing and secure Salt + Hash method to store users’ password. In this way, despite that the server is compromised, the hacker still cannot get the original passwords.
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                   We really enjoyed the whole summer of learning, coding, debating and laghing. You can also see our <a href="about.html">about</a> us page of wiki.
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                <td>3</td>
 
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                   Does your software include any other security features? Please describe them here.
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                   Create and share a description of the team's project via the iGEM wiki.
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                   Yes. We do not record any information related to users’ account or IP to correspond to users’ uploaded information in any way wherever it states Complete Anonymous. We will not ask for signing in unless to make sure this user is a registered user. Though in this way, users’ information is still away to be recorded.
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                   Thank you for watching our wiki now!
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                <td>4</td>
 
                 <td>
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                   Does your software let the user create a design by choosing parts/genes from a list/database, such as the Registry? If so, which lists/databases are included? Is there any restriction on which parts/genes the user can choose?
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                   Present a Poster and Talk at the iGEM Jamboree.
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                <td>
 +
                  Believe us, we will do it!
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                   No.
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                   Develop and make available via The Registry of Software Toolsan open source software tool that supports synthetic biology based on-BioBrick standard biological parts (remember, the iGEM judges will be looking for substantial team-based software projects).
 +
                <td>
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                  这个是什么意思？
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      </div>
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      <h2 class="ui dividing header">Glod Medal requirement</h2>
 +
        <section id="motivation"></section>
 +
        <p>To earn a Gold Medal, in addition to the Silver Medal requirements, a team must:</p>
 +
        <table class='ui table segment'>
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          <thead>
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            <tr>
 +
              <th>Requirement</th>
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              <th>Achievement</th>
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                <td>5</td>
 
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                   Does your software allow users to write new data into any public lists or databases? If so, do you check the new data for errors before allowing it to be written?
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                   Have another team utilized the software developed by your team. You must clearly show how your software was used and the results that were obtained?
 +
                </td>
                 <td>
                 <td>
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                   Yes, users are allowed to submit their own circuit. The information will be added to our own database. Before this, we will check it for errors.
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                   See <a href="achievement.html" target="_blank">achievement</a> part of this wiki.
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                <td>6</td>
 
                 <td>
                 <td>
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                   Does your software include any other features that encourage the user to create safe designs? Please describe them here.
+
                   Outline and detail how your software effects Human Practices in Synthetic Biology. Such topics include: safety, security, ethics, or ownership, sharing, and innovation.
                 </td>
                 </td>
                 <td>
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                   We set two kinds of registered users, average and professional. The professional users have an addition function that they can audit circuit information submitted by all users. On one hand, the audition will encourage users to make their design safer to earn satisfaction. On the other hand, the privilege can lead average users become professional; in turn the submitted designs will be safer.
+
                   One of the key points of Circuit+ is to promote sharing gene circuits. And using Mindmap, we can popularize synthetic biology from specialists to average people by asking them thinking of crazy ideas and put them on Mindmap. Meanwhile, using Mindmap to present circuits is one kind of innovation.
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                <td>7</td>
 
                 <td>
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                  Is your team also doing biological work in a wet lab?
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                  In place of requirement two, a team may instead use SBOL in your software documentation.
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                <td>
 +
                  Circuit+ supports importing and exporting data in form of SBOL.
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                   No.
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                  Develop and document a new technical standard that supports one of the following: 1.  design of BioBrick Parts or Devices; 2.  construction of BioBrick Parts or Devices; 3.  characterization of BioBrick Parts or Devices; 4.  the analysis, modeling, and simulation of BioBrick Parts or Devices; 5.  the sharing of BioBrick Parts or Devices, either via physical DNA or as information via the internet.
 +
                <td>
 +
                   We have two technical standards to define gene circuits and logical gene gate.
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                </td>
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              </tr>
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              <tr>
 +
                <td>
 +
                  Build upon existing software from a previous iGEM competition found on the The Registry of Software Tools
 +
                <td>
 +
                  This year we put TTEC into Clotho. TTEC is last year’s project of SUSTC-Shenzhen-B.
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        <h2 class="ui dividing header">Privacy policy</h2>
 
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        <section id="motivation"></section>
 
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Revision as of 09:23, 28 October 2013

SUSTC-ShenZhen-B

SUSTC-ShenZhen-B
My Account
iGEM Home
iGEM homepage Edit
Overview Standard and database
Software
Circuit+ Feature Tutorial Safety APIs Feedback Future
Clotho Lab management
Human practice
Workshop meeting Publicity
Team
About us Achievement Notebook Acknoledgement

Achievement

Below are requirements and our achievements.

Bronze Medal requiement Silver Medal requirement Gold Medal requirement

Bronze Medal requirement

To earn a Silver Medal, in addition to the Bronze Medal requirements, a team must do ONE of the following:

Requirement Achievement
Provide a detailed, draft specification for the next version of your software tool See future part of this wiki.
Provide a second, distinct (yet complementary) software tools project. We have put Circuit List, which is Clotho verion of Circuit+.
Provide a demonstration of their software either as a textual or video tutorial made available on their wiki. This tutorial should explain all the features of the tool as well as provide sample input and output as appropriate. See tutorial part of this wiki.

Bronze Medal requirement

Requirement Achievement
Register the team, have a great summer, and have fun attending the Jamboree. We really enjoyed the whole summer of learning, coding, debating and laghing. You can also see our about us page of wiki.
Create and share a description of the team's project via the iGEM wiki. Thank you for watching our wiki now!
Present a Poster and Talk at the iGEM Jamboree. Believe us, we will do it!
Develop and make available via The Registry of Software Toolsan open source software tool that supports synthetic biology based on-BioBrick standard biological parts (remember, the iGEM judges will be looking for substantial team-based software projects). 这个是什么意思？

Glod Medal requirement

To earn a Gold Medal, in addition to the Silver Medal requirements, a team must:

Requirement Achievement
Have another team utilized the software developed by your team. You must clearly show how your software was used and the results that were obtained? See achievement part of this wiki.
Outline and detail how your software effects Human Practices in Synthetic Biology. Such topics include: safety, security, ethics, or ownership, sharing, and innovation. One of the key points of Circuit+ is to promote sharing gene circuits. And using Mindmap, we can popularize synthetic biology from specialists to average people by asking them thinking of crazy ideas and put them on Mindmap. Meanwhile, using Mindmap to present circuits is one kind of innovation.
In place of requirement two, a team may instead use SBOL in your software documentation. Circuit+ supports importing and exporting data in form of SBOL.
Develop and document a new technical standard that supports one of the following: 1. design of BioBrick Parts or Devices; 2. construction of BioBrick Parts or Devices; 3. characterization of BioBrick Parts or Devices; 4. the analysis, modeling, and simulation of BioBrick Parts or Devices; 5. the sharing of BioBrick Parts or Devices, either via physical DNA or as information via the internet. We have two technical standards to define gene circuits and logical gene gate.
Build upon existing software from a previous iGEM competition found on the The Registry of Software Tools This year we put TTEC into Clotho. TTEC is last year’s project of SUSTC-Shenzhen-B.
© SUSTC-ShenZhen-B

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