Team:XMU Software/Project protein/Example of optimization
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Revision as of 00:39, 29 October 2013
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Example of optimization
RFP sequence | |||
biobrick number | E1010 | ||
sequence input | atggcttcctccgaagacgttatcaaagagttcatgcgtttcaaag
ttcgtatggaaggttccgttaacggtcacgagttcgaaatcgaagg
tgaaggtgaaggtcgtccgtacgaaggtacccagaccgctaaactg
aaagttaccaaaggtggtccgctgccgttcgcttgggacatcctgt
ccccgcagttccagtacggttccaaagcttacgttaaacacccggc
tgacatcccggactacctgaaactgtccttcccggaaggtttcaaa
tgggaacgtgttatgaacttcgaagacggtggtgttgttaccgtta
cccaggactcctccctgcaagacggtgagttcatctacaaagttaa
actgcgtggtaccaacttcccgtccgacggtccggttatgcagaaa
aaaaccatgggttgggaagcttccaccgaacgtatgtacccggaag
acggtgctctgaaaggtgaaatcaaaatgcgtctgaaactgaaaga
cggtggtcactacgacgctgaagttaaaaccacctacatggctaaa
aaaccggttcagctgccgggtgcttacaaaaccgacatcaaactgg
acatcacctcccacaacgaagactacaccatcgttgaacagtacga
acgtgctgaaggtcgtcactccaccggtgcttaataacgctgatag
tgctagtgtagatcgc |
||
sequence output | ATGGCCAGCAGCGAGGACGTCATCAAGGAGTTCATGAGGTTTAAGG TCCGCATGGAGGGTTCGGTCAACGGTCATGAATTCGAGATCGAGGG TGAAGGCGAGGGCCGCCCGTACGAAGGTACCCAGACCGCTAAGCTC AAAGTGACGAAGGGAGGGCCATTGCCCTTCGCCTGGGATATTCTCT CTCCCCAGTTCCAGTACGGAAGCAAAGCTTATGTCAAACACCCTGC TGACATTCCTGACTACTTGAAACTATCCTTCCCCGAGGGTTTCAAA TGGGAACGGGTCATGAACTTTGAAGACGGTGGCGTTGTTACTGTTA CCCAGGACTCGTCATTGCAGGACGGTGAATTTATCTACAAGGTCAA ACTACGTGGAACCAACTTCCCCTCCGATGGCCCTGTTATGCAGAAG AAGACTATGGGTTGGGAGGCTTCCACTGAGCGCATGTACCCTGAAG ATGGTGCCCTCAAGGGCGAAATAAAAATGCGCCTAAAGCTTAAAGA CGGCGGCCACTACGATGCTGAGGTTAAAACTACATACATGGCCAAG AAGCCTGTGCAACTACCCGGTGCTTATAAGACGGACATCAAGCTTG ACATTACCTCCCACAATGAAGACTACACTATCGTCGAACAATATGA GCGTGCTGAGGGCAGGCACTCTACCGGTGCTTAGTAGCGGTAATGATGCTAGTGCAGGTCT | ||
protected enzyme cutting site | ApaI GGGCCC |
BamHI GGATCC |
Bg1II AGATCT |
codon | original numbers | original proportion | final numbers | final proportion |
AAA | 22 | 0.09 | 9 | 0.04 |
AAC | 4 | 0.02 | 3 | 0.01 |
AAG | 0 | 0.00 | 13 | 0.06 |
AAT | 0 | 0.00 | 1 | 0.00 |
ACA | 0 | 0.00 | 1 | 0.00 |
ACC | 14 | 0.06 | 6 | 0.03 |
ACG | 0 | 0.00 | 2 | 0.01 |
ACT | 0 | 0.00 | 5 | 0.02 |
AGA | 1 | 0.00 | 0 | 0.00 |
AGC | 0 | 0.00 | 3 | 0.01 |
AGG | 0 | 0.00 | 3 | 0.01 |
AGT | 0 | 0.00 | 0 | 0.00 |
ATA | 0 | 0.00 | 1 | 0.00 |
ATC | 9 | 0.04 | 5 | 0.02 |
ATG | 9 | 0.04 | 9 | 0.04 |
ATT | 0 | 0.00 | 3 | 0.01 |
CAA | 1 | 0.00 | 2 | 0.01 |
CAC | 5 | 0.02 | 4 | 0.02 |
CAG | 7 | 0.03 | 6 | 0.03 |
CAT | 0 | 0.00 | 1 | 0.00 |
CCA | 0 | 0.00 | 1 | 0.00 |
CCC | 0 | 0.00 | 5 | 0.02 |
CCG | 12 | 0.05 | 1 | 0.00 |
CCT | 0 | 0.00 | 5 | 0.02 |
CGA | 0 | 0.00 | 0 | 0.00 |
CGC | 1 | 0.00 | 4 | 0.02 |
CGG | 0 | 0.00 | 2 | 0.01 |
CGT | 9 | 0.04 | 2 | 0.01 |
CTA | 0 | 0.00 | 4 | 0.02 |
CTC | 0 | 0.00 | 3 | 0.01 |
CTG | 12 | 0.05 | 0 | 0.00 |
CTT | 0 | 0.00 | 2 | 0.01 |
GAA | 19 | 0.08 | 10 | 0.04 |
GAC | 14 | 0.06 | 10 | 0.04 |
GAG | 3 | 0.01 | 12 | 0.05 |
GAT | 0 | 0.00 | 4 | 0.02 |
GCA | 0 | 0.00 | 0 | 0.00 |
GCC | 0 | 0.00 | 4 | 0.02 |
GCG | 0 | 0.00 | 0 | 0.00 |
GCT | 12 | 0.05 | 8 | 0.03 |
GGA | 0 | 0.00 | 3 | 0.01 |
GGC | 0 | 0.00 | 8 | 0.03 |
GGG | 0 | 0.00 | 1 | 0.00 |
GGT | 23 | 0.10 | 11 | 0.05 |
GTA | 0 | 0.00 | 0 | 0.00 |
GTC | 0 | 0.00 | 7 | 0.03 |
GTG | 0 | 0.00 | 2 | 0.01 |
GTT | 14 | 0.06 | 5 | 0.02 |
TAA | 2 | 0.01 | 1 | 0.00 |
TAC | 11 | 0.05 | 8 | 0.03 |
TAG | 2 | 0.01 | 3 | 0.01 |
TAT | 0 | 0.00 | 3 | 0.01 |
TCA | 0 | 0.00 | 1 | 0.00 |
TCC | 12 | 0.05 | 4 | 0.02 |
TCG | 1 | 0.00 | 2 | 0.01 |
TCT | 0 | 0.00 | 3 | 0.01 |
TGA | 1 | 0.00 | 1 | 0.00 |
TGC | 1 | 0.00 | 2 | 0.01 |
TGG | 3 | 0.01 | 3 | 0.01 |
TGT | 1 | 0.00 | 0 | 0.00 |
TTA | 0 | 0.00 | 0 | 0.00 |
TTC | 10 | 0.04 | 7 | 0.03 |
TTG | 0 | 0.00 | 3 | 0.01 |
TTT | 0 | 0.00 | 3 | 0.01 |