Team:Berkeley/HumanPractice/Economics

From 2013.igem.org

(Difference between revisions)
Line 27: Line 27:
learned there is potential interest for new ecofriendly technologies.  </p>
learned there is potential interest for new ecofriendly technologies.  </p>
 +
<div align="center">
<img src="https://static.igem.org/mediawiki/2013/5/5d/Indicanfermentor.png" width="400" /><img src="https://static.igem.org/mediawiki/2013/5/59/Glufermentor.png" width="400" />
<img src="https://static.igem.org/mediawiki/2013/5/5d/Indicanfermentor.png" width="400" /><img src="https://static.igem.org/mediawiki/2013/5/59/Glufermentor.png" width="400" />
 +
</div>
 +
<p> Here, we show a schematic of our envisioned scale up. Given the potential cost  
<p> Here, we show a schematic of our envisioned scale up. Given the potential cost  
benefits of anaerobic fermentation, we have worked to ensure that our engineered  
benefits of anaerobic fermentation, we have worked to ensure that our engineered  
Line 38: Line 41:
could reduce cost. We identified that secretion of B-glucosidase would allow us  
could reduce cost. We identified that secretion of B-glucosidase would allow us  
to avoid the need for cell lysis. We have built a plasmid meant to express and  
to avoid the need for cell lysis. We have built a plasmid meant to express and  
-
secrete B-glucosidase in S.cerevisiae.  
+
secrete B-glucosidase in S.cerevisiae. </p>
-
<img src="https://static.igem.org/mediawiki/2013/b/b4/Prepro-GLU-partsplasmids.png" width="400" />
+
 
 +
<div align="center">
 +
<img src="https://static.igem.org/mediawiki/2013/b/b4/Prepro-GLU-partsplasmids.png" width="500" />
Prepro tag targets the B-glucosidase fusion for secretion. We are currently working on testing the efficiency of this construct.  
Prepro tag targets the B-glucosidase fusion for secretion. We are currently working on testing the efficiency of this construct.  
-
</p>
+
</div>
 +
 
<p> Improving indican titer directly impacts the economics of our system. We  
<p> Improving indican titer directly impacts the economics of our system. We  
anticipate that in vivo concentration of our donor molecule (UDP-glucose) can be  
anticipate that in vivo concentration of our donor molecule (UDP-glucose) can be  
a limiting factor to indican titer. To address this problem, we have constructed  
a limiting factor to indican titer. To address this problem, we have constructed  
the following plasmids meant to overproduce the endogenous enzymes (PGM, and  
the following plasmids meant to overproduce the endogenous enzymes (PGM, and  
-
GalU).
+
GalU). </p>
-
<img src="https://static.igem.org/mediawiki/2013/4/4b/Fmo-oled-pgm-galu.png" width="400" />
+
 
-
<img src="https://static.igem.org/mediawiki/2013/2/2f/FMO-oled-pgm.png" width="400" />
+
<div align="center">
-
<img src="https://static.igem.org/mediawiki/2013/a/a0/Fmo-oled-galu.png" width="400" />
+
<img src="https://static.igem.org/mediawiki/2013/4/4b/Fmo-oled-pgm-galu.png" width="500" />
 +
<img src="https://static.igem.org/mediawiki/2013/2/2f/FMO-oled-pgm.png" width="500" />
 +
<img src="https://static.igem.org/mediawiki/2013/a/a0/Fmo-oled-galu.png" width="500" />
 +
</div>
 +
<p>
PGM and GalU of these enzymes directly participate in the production of UDP-glucose in  
PGM and GalU of these enzymes directly participate in the production of UDP-glucose in  
E.coli. We have built these plasmids, and we are currently working on testing increased indican production.  
E.coli. We have built these plasmids, and we are currently working on testing increased indican production.  
Line 57: Line 67:
   <div id="2"><div class = "heading-large"><a name="Assessing the Cost of Scale Up">Assessing the Cost of Scale Up</a></div>
   <div id="2"><div class = "heading-large"><a name="Assessing the Cost of Scale Up">Assessing the Cost of Scale Up</a></div>
<p> Even after our process is sufficiently optimized for scale up, several considerations must be taken into account to accurately assess economic feasibility. Here, we have included a list of considerations in developing a economically competitive dyeing methodology. The diagram, adapted from a presentation by Dr. Daniel Klein-Marcuschamer, combines the capital and operating costs associated with developing a bioreactor facility. Capital costs, such as the price of initially constructing a plant, equipment, intellectual property etc., amount to about half of the total costs associated with scale up. Operating costs such as the cost of maintaining the plant, feed chemicals (i.e. tryptophan and sugar), and consumables (i.e nickel resin and lysis beads) will also contribute to the over all affordability of our process.  
<p> Even after our process is sufficiently optimized for scale up, several considerations must be taken into account to accurately assess economic feasibility. Here, we have included a list of considerations in developing a economically competitive dyeing methodology. The diagram, adapted from a presentation by Dr. Daniel Klein-Marcuschamer, combines the capital and operating costs associated with developing a bioreactor facility. Capital costs, such as the price of initially constructing a plant, equipment, intellectual property etc., amount to about half of the total costs associated with scale up. Operating costs such as the cost of maintaining the plant, feed chemicals (i.e. tryptophan and sugar), and consumables (i.e nickel resin and lysis beads) will also contribute to the over all affordability of our process.  
-
<p><img src="https://static.igem.org/mediawiki/2013/a/a8/Kleinlecture.png" width="600" /></p>
+
 
 +
<div align="center">
 +
<img src="https://static.igem.org/mediawiki/2013/a/a8/Kleinlecture.png" width="600" />
 +
</div>
 +
 
<p>Adapted from lecture by Dr. Daniel Klein-Marcuschamer; Director, Technoeconomic Analysis, JBEI; Manager, Technoeconomic Analysis, AIBN
<p>Adapted from lecture by Dr. Daniel Klein-Marcuschamer; Director, Technoeconomic Analysis, JBEI; Manager, Technoeconomic Analysis, AIBN
  </p>
  </p>

Revision as of 02:20, 29 October 2013

Our visit to the ABPDU(LINK) made it evident that our biological dyeing process would need to be economically competitive with the current industry. As a result, we have made it a goal to optimize our system for future scale up. In addition, after interviewing an executive in the dyeing industry(LINK), we learned there is potential interest for new ecofriendly technologies.

Here, we show a schematic of our envisioned scale up. Given the potential cost benefits of anaerobic fermentation, we have worked to ensure that our engineered indican producing bacteria would be grown anaerobically. The dyeing agent (indican) would be isolated from cell culture by lysing and centrifuging the mixture. Fabric would be dipped into indican and subsequently exposed to B- glucosidase, from a second reactor.


In addition, visiting the ABPDU confirmed our suspicion that removing steps could reduce cost. We identified that secretion of B-glucosidase would allow us to avoid the need for cell lysis. We have built a plasmid meant to express and secrete B-glucosidase in S.cerevisiae.

Prepro tag targets the B-glucosidase fusion for secretion. We are currently working on testing the efficiency of this construct.

Improving indican titer directly impacts the economics of our system. We anticipate that in vivo concentration of our donor molecule (UDP-glucose) can be a limiting factor to indican titer. To address this problem, we have constructed the following plasmids meant to overproduce the endogenous enzymes (PGM, and GalU).

PGM and GalU of these enzymes directly participate in the production of UDP-glucose in E.coli. We have built these plasmids, and we are currently working on testing increased indican production.

Even after our process is sufficiently optimized for scale up, several considerations must be taken into account to accurately assess economic feasibility. Here, we have included a list of considerations in developing a economically competitive dyeing methodology. The diagram, adapted from a presentation by Dr. Daniel Klein-Marcuschamer, combines the capital and operating costs associated with developing a bioreactor facility. Capital costs, such as the price of initially constructing a plant, equipment, intellectual property etc., amount to about half of the total costs associated with scale up. Operating costs such as the cost of maintaining the plant, feed chemicals (i.e. tryptophan and sugar), and consumables (i.e nickel resin and lysis beads) will also contribute to the over all affordability of our process.

Adapted from lecture by Dr. Daniel Klein-Marcuschamer; Director, Technoeconomic Analysis, JBEI; Manager, Technoeconomic Analysis, AIBN

References: Klein-Marcuschamer, Daniel. "The Challenge of Enzyme Cost in the Production of Lignocellulosic Biofuels ." Biotechnology and Bioengineering. (2011): n. page. Print.