"
Team:Heidelberg/Templates/NRPS-W-12
From 2013.igem.org
JuliaS1992 (Talk | contribs) |
|||
| Line 4: | Line 4: | ||
== Draft of command-line application == | == Draft of command-line application == | ||
| + | We thought of a common XML format for NRPs. Additionally a first command line application was written in C++ for extracting data about an NRP from those XML files. | ||
Latest revision as of 03:29, 29 October 2013
Initial database setup
First of all we began to design a database - which we modified, edited and changed all-over again numerous times - which ought to be capable of saving the data concerning NRPS origins, pathways, modules, specificity and lots of more information on them we needed for a later prediction of domains capable of producing a certain NRP. We focused on saving the data in a non-redundantly and easy to rerieve manner. Therefore we first set up a GitHub repository which contained the SQL-file of our first database-design. For it's implementation we used phpmyadmin, which spared us writing the whole thing in SQL. Creating forms to "easily" fill our newly implemented database we started with - what later turned out to be a quite naive idea - writing php scripts which connected to our MySQL-database using nasty index-files containing root-username and passwort of different localhosts.
Draft of command-line application
We thought of a common XML format for NRPs. Additionally a first command line application was written in C++ for extracting data about an NRP from those XML files.
