From 2013.igem.org
Sep 17
Liquid Culture
Tatsui and Hirano
| Sample | medium
|
| Spinach-DT | LB medium(+CP)
|
| Pcon-Spinach-DT | LB medium(+Amp)
|
| Pcon-pT181 antisense-Spinach-DT | LB medium(+Amp)
|
PCR
Hirano
| Pcon-tetR aptamer-DT(VF) | BigDye | 5x buffer | primer(VF) | MilliQ | total
|
| 1.3 | 0.5 | 1.75 | 0.5 | 0.45 | 10.5
|
| Pcon-tet ap-DT(VR) | BigDye | 5x buffer | primer(VR) | MilliQ | total
|
| 1.3 | 0.5 | 1.75 | 0.5 | 0.45 | 10.5
|
| PreDenature | Denature | Annealing | Extension | cycle
|
| 96 °C | 96 °C | 50 °C | 60 °C | --
|
| 2 min | 10 sec | 5 sec | 4 min | 30 cycles
|
Electrophoresis
No name
| Lane | Sample | Enzyme1 | Enzyme2
|
| 1 | 1kbp ladder | -- | --
|
| 2 | Pcon-RBS-tetR-DT | XbaI | PstI
|
| 3 | Pcon-RBS-tetR-DT | -- | --
|
| 4 | pSB4K5 | XbaI | PstI
|
| 5 | pSB4K5 | -- | --
|
| 6 | pSB1C3 | EcoRI | SpeI
|
| 7 | pSB1C3 | EcoRI | PstI
|
| 8 | pSB1C3 | -- | --
|
| 9 | pT181 attenuator | EcoRI | SpeI
|
| 10 | pT181 attenuator | -- | --
|
| 11 | 1kbp ladder | -- | --
|
File:Igku xxxxxx.xxx
Ligation
No Name
| state | Vector | Inserter | Ligation High ver.2
|
| experiment | 8/28 Plux (SpeI & PstI) | 5.0 µL | 9/13 RBS-lysis1-DT (XbaI & PstI) | 3.5 µL | 3.5 µL
|
| experiment | 8/28 Plux (SpeI & PstI) | 5.0 µL | 9/13 RBS-lysis2-DT (XbaI & PstI) | 3.6 µL | 3.5 µL
|
| experiment | 8/28 Plux (SpeI & PstI) | 11.0 µL | 9/13 RBS-lysis3-DT (XbaI & PstI) | 9.5 µL | 3.5 µL
|
| experiment | 9/14 Plac (SpeI & PstI) | 2.4 µL | 9/16 pT181 attenuator-DT (XbaI & PstI) | 4.8 µL | 3.5 µL
|
| experiment | 9/14 Plac (SpeI & PstI) | 2.4 µL | 9/3 pT181 antisense (XbaI & PstI) | 2.0 µL | 2.2 µL
|
| experiment | 9/14 Plac (SpeI & PstI) | 2.4 µL | 9/10 aptamer 12_1R-DT (XbaI & PstI) | 1.8 µL | 2.1 µL
|
| experiment | 9/13 pSB1C3 (XbaI & PstI) | 2.0 µL | 9/15 Pcon-PT181 antisense-Spinach-DT (XbaI & PstI) | 12.0 µL | 3.5 µL
|
| experiment | 9/16 pSB1C3 (EcoRI & SpeI) | 1.0 µL | 9/15 Pcon-Spinach-DT (EcoRI & SpeI) | 4.1 µL | 2.0 µL
|
| experiment | 9/16 pSB1C3 (EcoRI & SpeI) | 1.0 µL | 9/15 Pcon-RBS-tetR-DT (EcoRI & SpeI) | 2.0 µL | 1.5 µL
|
| experiment | 9/16 pSB1C3 (EcoRI & SpeI) | 1.0 µL | 9/15 Pcon-PT181 attenuator-DT (EcoRI & SpeI) | 2.4 µL | 1.7 µL
|
| experiment | 9/16 pSB1C3 (EcoRI & SpeI) | 1.0 µL | 9/15 Pcon-aptamer 12_1R-DT (EcoRI & SpeI) | 17.0 µL | 1.5 µL
|
| experiment | 9/16 pSB1C3 (XbaI & PstI) | 1.0 µL | 9/15 Pcon-aptamer 12_1R-DT (EcoRI & SpeI) | 4.4 µL | 3.5 µL
|
| Lane | DNA | Enzyme
|
| 1 | 1kbpladder | --
|
| 2 | pSB1C3 | EcoI+SpeI
|
| 3
|
| 4
|
File:Igku xxbeforexx.xxx
File:Igku xxafterxx.xxx
| Name | concentration[µg/mL] | 260/280 | 260/230
|
| pSB1C3 | 10.0 | 1.84 | 0.40
|
| Lane | DNA | Enzyme
|
| 1 | 1kbpladder | --
|
| 2 | pSB4K5 | XbaI+PstI
|
| 3
|
| 4
|
File:Igku xxbeforexx.xxx
File:Igku xxafterxx.xxx
| Name | concentration[µg/mL] | 260/280 | 260/230
|
| pSB4K5 | 7.6 | 1.81 | 0.32
|
| Lane | DNA | Enzyme
|
| 1 | 1kbpladder | --
|
| 2 | Pcon-RBS-tetR-DT | XbaI+PstI
|
| 3
|
| 4
|
File:Igku xxbeforexx.xxx
File:Igku xxafterxx.xxx
| Name | concentration[µg/mL] | 260/280 | 260/230
|
| Pcon-RBS-tetR-DT | 8.0 | 2.40 | 1.14
|
| Lane | DNA | Enzyme
|
| 1 | 1kbpladder | --
|
| 2 | pSB1C3 | EcoRI+PstI
|
| 3
|
| 4
|
File:Igku xxbeforexx.xxx
File:Igku xxafterxx.xxx
| Name | concentration[µg/mL] | 260/280 | 260/230
|
| pSB1C3 | 9.1 | 2.17 | 0.35
|
Mutation PCR
Kinose
| pC KaiABC(100pg) | Prime STAR(2x) | Primer(KaiA-Bsai MuT-Fwd) | Primer(KaiA-Bsai MuT-Rev) | MilliQ | total
|
| 1.0 | 25.0 | 1.0 | 1.0 | 22.0 | 50.0
|
| 1.5 | 25.0 | 1.0 | 1.0 | 21.5 | 50.0
|
| 2.0 | 25.0 | 1.0 | 1.0 | 21.0 | 50.0
|
| PreDenature | Denature | Annealing | Extension | cycle
|
| 96°C | 98°C | 65°C | 72°C | --
|
| 5m | 10s | 15s | 40s | 30cycles
|
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