Team:XMU Software/promoter

Revision as of 03:15, 29 October 2013 by YuezhenChen (Talk | contribs)

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)

In the following sequence, the highlighted parts are the sigma factor binding sites predicted by our software, and the black frames represent the experimentaly determined sigma factor binding site, all the data is derived from regulon DB

1. a c g g g a a a c a g a c t c a t g t t g a c c t t g g t t g t a a a g a g a g a g c a g g c g t t a t t a t t t t c a G c a t c t g t c g c c g c a g a g a a g 30 15 30 15

2. g c g a g a g c a a c a t t g c t g t a g a t t g a t a t t t a a t a t a t t a g c g t a a c t g t t a t g c t g t t a T c t a t a t t a t g t g a t c t a a a t 30 16 14 15

3. g g g c a t g g a a a g c c g g g c g a g a g c a a c a t t g c t g t a g a t t g a t a t t t a a t a t a t t a g c g t A a c t g t t a t g c t g t t a t c t a t 30 15 30 15

4. g g g a a a c a g a c t c a t g t t g a c c t t g g t t g t a a a g a g a g a g c a g g c g t t a t t a t t t t c a g c A t c t g t c g c c g c a g a g a a g g g 28 18 28 15

5. g c c c g g g a a a a a t a t g c t c g c g g g c t t g c t a t c t c g c t g a c g g a c a g g c a a a t t g a t g a c C a g c t t t t a a a c c g a c t c c g t 27 17 27 17

6. t g a a g g t t a t t t a c a t g t t a g c t g t t g a t t a t c t t c c c t g a t a a g a c c a g t a t t t a g c t g C c a a t t g c t a c g a a a t c g t t a 26 17 8 17

7. a c t c c g c g g t t c g a c c a c t t t t t t a t c c a a a g t t t c g g g c t g t t a t g t t t t a a t g t g c a a C a t t c a t g g t c t g t t g g g g g c 21 18 21 18

8. t a t t t t t a a t t a a a a t g g a a a t t g t t t t t g a t t t t g c a t t t t a a a t g a g t a g t c t t a g t t G t g c t g a a c g a a a a g a g c a c a 29 16 25 29 16

9. a a a g c g c g g c a a c t a a a c g t a g a a c c t g t c t t a t t g a g c t t t c c g g c g a g a g t t c a a t g g G a c a g g t t c c a g a a a a c t c a a 27 16 27 41 17

10. a a t g t t c c g t c g t t a t t c c a g a c g a c t g g c a a c t a a c a t c g c a g c a g c a a g c c t t t a t a g A a c t g t t t g c t g a a g a t g a t c 27 17 55 15

11. t c t t t t a t c a a t t t g g g t t g t t a t c a a a t c g t t a c g c g a t g t t t g t g t t a t c t t t a a t a t T c a c c c t g a a g a g a a t c a g g g 33 17 24 20

12. t t t a t g t t g c t t t t t t g t a a a c a g a t t a a c a c c t c g t c a a a a t c c t g c t a t t c t g c c c g t T g c g g t a c t g g g c a t t t a c c c 27 17 27 17

13. g t t c g t g a a t t t a c a g g c g t t a g a t t t a c a t a c a t t t g t g a a t g t a t g t a c c a t a g c a c g A c g a t a a t a t a a a c g c a g c a a 26 18 2 11 15

14. a a a g t c a g t t a a t g t a a t g c c t c c t a c t g a c c a a a g a a t a c t t g c a c t t a a g g t t c a g t a T a a a a g g g c a t g a t a a t t t a c 28 16 54 15

15. t t a c g a g g t t t t a a t t c t g c c t c t t t c a a c c c g c g t c a a a a t aa a a c a g t a g a a t a t t a a T c t t t t t t t g t g t t t a t g t g c 25 20 25 20

16. g a t t t c a a a t t g g t c a a t g g t c a a a a g t t a a t a a a c c c a t t g c t g c g t t t a t a t t a t c g t C g t g c t a t g g t a c a t a c a t t c 29 18 29 16

17. a a c g t a a a a a a t c g t t g c g c a a t c g t g g a t t t t t a c c c t g c t t t g t t t t t a t a a t g g t g c G c a c t t t t a t a t c c a g a a a a a 26 19 30 15

18. t t c a g t g a t a a t t a t c a c a t t t c a a t t g c a c a t t a a t g g a t a t t c t t t a a t a a t c t c g c g A c g t t t c t t t a t g a t a a a t a a 27 17 21 15

19. c a a c a a c g g t t c a g t g a t a a t t a t c a c a t t t c a a t t g c a c a t t a a t g g a t a t t c t t t a a t A a t c t c g c g a c g t t t c t t t a t 30 15 22 30 15

20. t t c a a t t g c a c a t t a a t g g a t a t t c t t t a a t a a t c t c g c g a c g t t t c t t t a t g a t a a a t a A t a a t c a a a t t g a t a a a a t c a 27 18 27 18

21. t t g t t a t c t a g t t g t g c a a a a c a t g c t a a t g t a g c c a c c a a a t c a t a c t a c a a t t t a t t a A c t g t t a g c t a t a a t g g c g a a 26 18 2 20

22. t t c a a a a a t g t t t g t t t t t c a c g c g c t t t a c a g c c c g a a a a g g c c g g a a g a t a c t t g c c c G c a a c g a a g a t t c c t t c a t a a 28 17 28 17

23. a g c t t g c g t c a a t g g g c a a g g t g g g c t t g c a t t t g c t t a a t a g a a a g g c g t t a a t a g g c a A a a c g a a a t g a a a c g a a a g t t 34 16 52 18

24. t c g t t t t a t t t c t t t t t t c t c c a t t g a a c t t t c a g t t t c t t t t c t a t a g a t t t t a a t c a a C g a a a g a c a t c a c c a a g t g a a 25 15 25 17

25. a t c g a t t t g a t a a t g g a a a c g c a t t a g c c g a a t c g g c a a a a a t t g g t t a c c t t a c a t c t c A t c g a a a a c a c g g a g g a a g t a 25 18 25 18

26. t a g g t a a g a g c t t a g a t c a g g t g a t t g c c c t t t g t t t a t g a g g g t g t t g t a a t c c a t g t c G t t g t t g c a t t t g t a a g g g c a 26 20 26 17

27. t a a g a a a c t a a t a t t a g a c g t a a a t a t t g a a a t t t t t a t a t t t t t t c t t a t t t a g g c t t t G c a t t t g g c a a a a t t t t g a g g 28 18 28 20

28. a g a a a c t a a t a t t a g a c g t a a a t a t t g a a a t t t t t a t a t t t t t t c t t a t t t a g g c t t t g c A t t t g g c a a a a t t t t g a g g c a 26 20 26 20

29. t t g c a t t t g g c a a a a t t t t g a g g c a t t t t g c c g a c a t c g t a g g a t t t t t a a t a t t a c a c c A a c t g c g a a t t a t c g c c a g a a 29 15 29 15

30. c a g a a c a a t t c a c t a t a t a a c a t t g c a t g t a a a g c a t a t a c a c c t c a t t a t t t t g t c a t t A t t a a g t t a t t a a c a g c a c a a 24 20 24 20

31. a g a t a a a t t t c c t g t t t t t a a a g c a g a g t t c c t c a t t t a a c g t c a t t a a t a a a a t g t t c t A a a a c g c t g g a c a g a c a g a a a 30 15 18 15

32. c t g a c t a a a t a a a a a t t t t t c a c t a a t t g a t t a g t c a t a g c c a g c g a t a t a c g c t a t g c g A a a a t g c a g a t g g c a a t g a g a 28 17 28 17

33. a c t a c a c g t t g c a a t t t g c c g t t g a c a c a t t c g g g c g g a a t t c a t a t g a t g c c g c c c g t c A a c t c g a c a a g c t t t a c g t g a 23 17 23 17

34. a a t g c g a g c g g t t t t c c a a a a t t g t t c a t t t g c c t g a t t t t t c a g c g a t t g a a a c t a c a c G t t g c a a t t t g c c g t t g a c a c 31 15 14 17

35. a t t g a a a c t a c a c g t t g c a a t t t g c c g t t g a c a c a t t c g g g c g g a a t t c a t a t g a t g c c g C c c g t c a a c t c g a c a a g c t t t 29 17 29 17

36. c c c t t c a c a g a a t t g t c c t t t c a c g a t t c c g t c t c t c t g a t g a t t g a t g t t a a t t a a c a a T g t a t t c a c c g a a a a c a a a c a 28 18 21 20

37. t c g c g a c a a c c g g a a t a t g a a a g c a a a g c g c a g c g t c t g a a t a a c g t t t a t g c t g a a a g c G g a t g a a t a a g g a g a t g c g a t 28 16 18 19

38. a a a g c g g t a c g g g c c g t t g c c a g c g c c t g t g c c g c c a a c a a g c t g g c t a t c a t a a t a c c c T g t c a t c g g g t g g t c c g t g g t 28 15 28 16

39. c a g a a c c g c t t g c c g g t a t g g g t t t t g a a a c c t a t g c c a t t g c c a g c g c c a t c a t t g g c g G c a c c a g t t t c t t c g g c g g c a 26 19 26 19

40. c a t c t a t c a t c t a a a a a a c c a g a a a a a c a a a t a a c a t c a t g t t t t t a a a c t a a t t a a a t g A a a t a a a a t t t t a a g c c a c t c 22 19 44 15

41. a g c a a c a t c t a t c a t c t a a a a a a c c a g a a a a a c a a a t a a c a t c a t g t t t t t a a a c t a a t t A a a t g a a a t a a a a t t t t a a g c 27 19 49 15

42. a a c a g t g t a a a a g g t a t g t a a c a g a c c a t t g a c t g g c t g a a t g g t c t g t c a t a c t t t g t t A c c t g c a a a g g g g a g t a a c t t 30 15 30 17

43. a c a g t g t a a a a g g t a t g t a a c a g a c c a t t g a c t g g c t g a a t g g t c t g t c a t a c t t t g t t a C c t g c a a a g g g g a g t a a c t t c 29 17 29 17

44. g t g a a c g g t c g a a t t a g c c a a t a t c t g a c g a a a a t c g g t t g a a a a a g t g g c a t a a t g g g g A g t t g t c a a c t a t t g a a a t g a 26 20 26 20

45. t t t a c c a c g g c a c a c c t c t t t g c a t g a t t a t t c g a a a t t a g t g t a t t t t t a t t c t g t t t t T t c g c a g g g t g c a a g t g t a a a 25 20 21 18

46. t a a a a a g a a t g t t t a c c g t t t a t t a g a t g a c a g a t t a t g c g t c t t t c g c t a a a g t t t c c g G t c a a a t t a g t c g t t t a c t t g 28 17 28 17

47. t a c g g t c t g g c t g c t a t c c t g a c a g t t g t c a c g c t g a t t g g t g t c g t t a c a a t c t a a c g c A t c g c c a a t g t a a a t c c g g c c 27 16 27 16

48. g c t c c g c a g g a t a a c c t c t t t t g a a t c t g a a t g a g t c g a t g g c t c g c g a a t a a t c c g a t t A c g g c t a c g c t t c t a a t g t t c 28 16 51 18

49. t c a c g t t g t a a a t t g t t t a a c g t c a a a t t t c c c a t a c a g a g c t a a g g g a t a a t g c g t a g c G t t c a c g t a a c t g g a g g a a t g 23 20 35 17

50. g g c g a a t a c c t c t g g t c g t a g a g t t t c a g g a t a a a g a g g g a g a t c t a c c a t t a t c g g g t t A t t t t t c t c t c t t c g c c t a c a 25 16 25 16

51. a a t a a a a a a c a a c a t a c a t a t a a t a a t t t a a t c t t a a a t g a a a t t t a t t a a a a t t t g c a a A c t a t a a t t t t g t g t a t a a a a 28 16 39 19

52. a a a g c a c t g a a g c a c a a c a a t c g c a g t t g c a a t t a t t g c g t a c a g c c a g t a c a t t c t g g c G t t t t c g a g c a c a g g c g c a g g 28 17 28 17

53. a a t c a a a t t t a c t g g a t t t a t t t a t c t g g t g a a t g a c t c g c c t t c g t t t t t a a a a t a g c c G c g c a t t a t t t c c g t c g t c a c 30 16 30 16

54. c c a t a a g a t t a g c g g a t c c t a c c t g a c g c t t t t t a t c g c a a c t c t c t a c t g t t t c t c c a t A c c c g t t t t t t t g g a t g g a g t 24 18 24 18

55. c a a t g t g g a c t t t t c t g c c g t g a t t a t a g a c a c t t t t g t t a c g c g t t t t t g t c a t g g c t t T g g t c c c g c t t t g t t a c a g a a 28 20 50 20

56. c a t a t t t a t g c t g t t t c c g a c c t g a c a c c t g c g t g a g t t g t t c a c g t a t t t t t t c a c t a t G t c t t a c t c t c t g c t g g c a g g 23 19 23 19

57. a a t t c t g c g a t g t g a t a t t g c t c t c c t a t g g a g a a t t a a t t t c t c g c t a a a a c t a t g t c a A c a c a g t c a c t t a t c t t t t a g 24 19 13 19

58. g a a t a c a g a g g g g c g a a t t a t c t c t t g g c c t t g c t g g t c g t t a t c c t g c a a g c t a t c a c t T t a t t g g c t a c g g t g a t t g g t 26 19 47 17

59. t t g g g t g t c c g g c c c c t c t t a g c c t g t t a t g t t g c t g t t a a a a t g g t t a g g a t g a c a g c c G t t t t t g a c a c t g t c g g g t c c 28 15 27 16

60. t t t a t t g g g t g t c c g g c c c c t c t t a g c c t g t t a t g t t g c t g t t a a a a t g g t t a g g a t g a c A g c c g t t t t t g a c a c t g t c g g 32 15 2 17

61. t t t a c a a a a a a c a c a c t a a a c t c t t c c t g t c t c c g a t a a a a g a t g a t t a a a t g a a a a c t c A t t t a t t t t g c a t a a a a a t t c 28 15 44 15

62. g t g a c a a a g a t t t a t g c t t t a g a c t t g c a a a t g a a t a a t c a t c c a t a t a a a t t g a a t t t t A a t t c a t t g a g g c g t t a g c c a 26 15 26 17

63. c t g a t t g c c a a t t a a t a t t a t c a a t t t c c g c t a a t a a c a a t c c c g c g a t a t a g t c t c t g c A t c a g a t a c t t a a t t c g g a a t 26 18 26 18

64. t t c a g c c t t c t t c a g g g c t g a c t g t t t g c a t a a a a a t t c a t c t g t a t g c a c a a t a a t g t t G t a t c a a c c a c c a t a t c g g g t 27 20 31 18

65. a a a c g g c a a t a c g c c a c g c g c a c g t t g c t g a c g a a a a c a g c c a t t t g c a g t a t a c t c c c g C c c t a a t t t c t t t a a c t g g t g 26 20 26 20

66. c a g c a a c c a g a t c a a a a g c c a t t g a c t c a g c a a g g g t t g a c c g t a t a a t t c a c g c g a t t a C a c c g c a t t g c g g t a t c a a c g 23 16 23 16

67. a g c a a t c g a g c g g c a g c g t a c t t a c c c c g c a c t c c a t t a g c g g g t a t a c t c a t g c c g c a t T g t c c t c t t a g t t a a a t g g a t 23 17 23 17

68. g c g c a a t t t a t t t a a a a a g g g a c t a g a c a g a g g g g t g g g a a g t c c g t a t t a t c c a c c c c c G c a a c g g c g c t a a g c g c c c g t 24 18 25 17

69. g t a a a t a a a a a t g t a c g a a a t a t g g a t t g a a a a c t t t a c t t t a t g t g t t a t c g t t a c g t c A t c c t c g c t g a g g a t c a a c t a 28 16 28 16

70. t a a t c c g t t c a t a g t g t a a a a c c c c g t t t a c a c a t t c t g a c g g a a g a t a t a g a t t g g a a g T a t t g c a t t c a c t a a g a t a a g 28 17 28 17

71. c t t a g t c g c c g a a t g t a c t a g a g a a c t ag t g c a t t a g c t t a t t t t t t t g t t a t c a t g c t a A c c a c c c g g c g a g g t g t g a c a 30 16 30 16

72. c g g c g a g g t g t g a c a c a c c t c g c a c t t g a a a t c a g c a g c g a t t g g t t t a t c g t g a t g c g c A t c a c t t c c c g g c a g t c c t g c 27 16 27 16

73. t t a c g c t g a a c g t g t t t c a t c t a t t t g a c g c g c g c a g g t a t t t a g c a t a c a a g g a g t a c c G a t t t g a g a g t t g g t g c t c t t 26 15 20 18

74. c a g a g g g a t g g g t g a t t t a t t c a g t t g c c a a a c c c g c t g g a g t a t t g a g a t a a t t t t c a g T c t g a c t c t c g c a a t a t c t t a 26 20 26 20

75. t a a a t g t a a t t t a t t a t t t a c a c t t c a t t c t t g a a t a t t t a t t g g t a t a g t a a g g g g t g t A t t g a g a t t t t c a c t t t a a g t 25 16 25 16

76. t t c a a c c a t g c a t a a a g c g g g t g c a t t c g c t g c c g c a t a c c a t t a t t c t t g a t c t g a c g g A a g t c t t t t t g t a a c a a t t c a 22 17 13 20

77. t g c a t t c g c t g c c g c a t a c c a t t a t t c t t g a t c t g a c g g a a g t c t t t t t g t a a c a a t t c a A a c t t c t t t g a t g t a a a c a a a 29 18 29 18

78. a t a t t t c t t t a g t t g t a a t c a t a t t a a a t t t t t t c a c t g t t c t g a t a g t t a a a a t t c a a g A c a t c a a t a a a c a a t g a g a t a 25 20 25 20

79. a g a a t a a g g g t g t c t g t t a a t c g c a t t g a c g c c a a a a t a a c t t a a t g t c a t a c a c t t c a c A c a c t t t t a t t a a c t c a g c a t 27 19 27 19

80. c a a g a a t a a g t t a t c a a t a a c c a g t t t g t g a t c t c t g a a g a a t a t t a c t a a a g t t a a a a t G t a a t c c g a t t t a a a t a t c g a 27 17 26 18

81. c a t t c g t t a a g t c a t a t a t g t t t t t g a c t t a t c c g c t t c g a a g a g a g a c a c t a c c t g c a a C a a t c a g g a g c g c a a t a t g t c 25 17 25 17

82. c a t t t a a a t t a t t t a a t c a t g t t t a t t g c a t a t a a a t t c a c t t g a t g g c a t t g t t a t c c c A t g c c g c a g a c a c g g c c a a a a 27 17 13 15

83. t t t t a a c t t t t a a a g c a g a a a t a t t g c a t a a t t a t t c t g t c a a a g g t a c t a t c t t c g a c c T c a a t a g c t a t c a g a c t g c c a 25 17 10 18

84. a t a a a a a a t g a a c a a t t c a c t c t c t t g c t t a t t t a g t g a c a a c t a t t c a t g a t t t t g t g a A a c c g g t t t c t t a a t t c c g t t 26 17 26 17

85. a a t a t t t t t c c c g c c g a t t g t g c a a g g a c a a t c g g c a a a c g g t g c a g t a c a c t g c g t t g a T t g c g t g t a a a g g g a t g a a a a 26 17 7 15

86. t c a t t c a a t a a a a a g c c t a a c t c a c t t t t g a t t c a t t a a a a a a g a a g g c t a a a a t a g a a t G a a t c a t c a a t c c g c a t a a g a 29 16 29 16

87. a a t g a c t t a t g a a a t t t a g t g t t g a c a g a c a a g g t a c c g c t a a g t a a t a t t c g c c c c g t t C a c a c g a t t c c t c t g t a g t t c 23 20 23 17

88. t t g g g g a a t t t a a a a a t c g g g t t t g a c a a a a g a t t t t t c g c c g t t a a g a t g t g c c t c a a c A a c g a t t c c t c t g t a g t t c a g 24 16 24 16

89. c a a a a a a a t g c a t t t c a c c c t t t g a c a t c a c c a t g c a c t g c c a t t a a t a t g c g c c c c g t t C a c a c g a t t c c t c t g t a g t t c 23 17 23 17