Team:Evry/Notebook/Test

From 2013.igem.org

Revision as of 11:07, 7 September 2013 by Rasend (Talk | contribs)

Iron coli project

Week 1: 17th June - 23rd June

Week 2: 24th June - 30th June

Week 3: 1st July - 7th July

Week 4: 8th July - 14th July

Week 5: 15th July - 21st July

Week 6: 22nd July - 28th July

Week 7: 29th July - 4th August

Week 8: 5th August - 11th August

Week 9: 12th August - 18th August

Week 10: 19th August - 25th August

Week 11: 26th August - 1st September

Week 12: 2nd September - 8th September

Week 13: 9th September - 15th September

Week 14: 16th September - 22nd September

Week 15: 23rd September - 29th September

Week 16: 30th September - 6th October

Week 17: 7th October - 13th October

Week 18: 14th October - 20th October

Week 19: 21st October - 27th October

Week 20: 28th October - 3rd November

FUR and iron metabolism in bacteria

  • Ahmad, R., Brandsdal, B.O., Michaud-Soret, I., and Willassen, N.-P. (2009). Ferric uptake regulator protein: Binding free energy calculations and per-residue free energy decomposition. Proteins: Structure, Function, and Bioinformatics 75, 373–386. (link to the pdf)
  • Andrews, S.C., Robinson, A.K., and Rodríguez-Quiñones, F. (2003). Bacterial iron homeostasis. FEMS Microbiol. Rev. 27, 215–237. (link to the pdf)
  • Escolar, L. , Pérez-Martín, J., and De Lorenzo, V. (1991). Opening the Iron Box: Transcriptional Metalloregulation by the Fur Protein. Journal of Bacteriology 181,20. (link to the pdf)
  • Guerinot, M.L. (1994). Microbial iron transport. Annu. Rev. Microbiol. 48, 743–772.
  • Oglesby-Sherrouse, A.G., and Murphy, E.R. (2013). Iron-responsive bacterial small RNAs: variations on a theme. Metallomics 5, 276.
  • Pecqueur, L. (2006). Structural Changes of Escherichia coli Ferric Uptake Regulator during Metal-dependent Dimerization and Activation Explored by NMR and X-ray Crystallography. Journal of Biological Chemistry 281, 21286–21295. (link to the pdf)
  • Schilling, C.H., Held, L., Torre, M., and Saier, M.H., Jr (2000). GRASP-DNA: a web application to screen prokaryotic genomes for specific DNA-binding sites and repeat motifs. J. Mol. Microbiol. Biotechnol. 2, 495–500. (link to the pdf)
  • Tiss, A., Barre, O., Michaud-Soret, I., and Forest, E. (2005). Characterization of the DNA-binding site in the ferric uptake regulator protein from Escherichia coli by UV crosslink to the pdfing and mass spectrometry. FEBS Letters 579, 5454–5460. (link to the pdf)
  • Tsolis, R., Baumler, A.J., Stojiljkovic, I., and Heffron, F. (1995). Fur regulon of Salmonella typhimurium: identification of new iron-regulated genes. Journal of Bacteriology 177, 4628–4637. (link to the pdf)
  • Valdebenito, M., Crumbliss, A.L., Winkelmann, G., and Hantke, K. (2006). Environmental factors influence the production of enterobactin, salmochelin, aerobactin, and yersiniabactin in Escherichia coli strain Nissle 1917. International Journal of Medical Microbiology 296, 513–520.
  • Visca, P., Leoni, L., Wilson, M.J., and Lamont, I.L. (2002). Iron transport and regulation, cell signalling and genomics: lessons from Escherichia coli and Pseudomonas. Mol. Microbiol. 45, 1177–1190. (link to the pdf)
  • Zhang, Z., Gosset, G., Barabote, R., Gonzalez, C.S., Cuevas, W.A., and Saier, M.H. (2005). Functional Interactions between the Carbon and Iron Utilization Regulators, Crp and Fur, in Escherichia coli. Journal of Bacteriology 187, 980–990. (link to the pdf)