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Team:UCSF/Modeling
From 2013.igem.org
Modeling Outline for Website:
1) Importance of Modeling
a) Sugar Circuit: i) To make a model that would allow us to predict how our circuit will react to different concentrations of inducer.
b) Conjugation: i) What is the minimum conjugation rate to get effective toxic repression ii) How many donor cells are needed to get effective toxic repression c) Mention efficiency
2) Simplifications (for each project)
a) Sugar Circuit: i) Assuming Quasi Steady State: (1) Give explanation of SS
b) Conjugation:
3) Equations w/ legend a) Too difficult to just copy/paste in word; just look at 08.05 powerpoint :p
4) Graphs a) Sugar Circuit: i) RFP/GFP ii) Repressor iii) Repressor Compounds b) Conjugation: iii) Repressor Compounds b) Conjugation:
5) Parameters for Sugar Circuit a) Sugar Circuit: i) The effect of each parameter on the overall outcome (1) Will add this later after I finish checking parameters. b) Conjugation:
