Template:Kyoto/Notebook/Sep 21

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Contents

Sep 21

Electrophoresis

no name

LaneSampleEnzyme1Enzyme2
1Pcon-RBS-lacZα-DT----
21kbp ladder----
3pSB1C3+pT181 attenuator----

Igku 9211.jpg

Liquid Culture

No name

Samplemedium
9/2 spinach-DT-2--
8/16 Plux-4--
8/27 Plux-RBS-GFP-DT-1--
9/5 Pcon-pT181 attenuator-1--

Master Plate

No name

NumberUse LB plate
18/27 Pλ-luxI-1(+Amp)
29/10 Plac(BBa-R0011)-3(+Amp)
39/5 Pcon-RBS-tetR-DT-1(+Amp)
49/5 Pcon-pT181 antisense-1(+Amp)
59/15 Pcon-pT181 attenuator(+Amp)
69/- Pcon-apt12_1R-DT-1(+Amp)
79/5 Pcon-spinach-DT-3(+Amp)
88/27 Pcon-RBS-GFP-DT-Pcon-RBS-luxR-DT(+Amp)
NumberUse LB plate
19/4 pT181 antisense(pSB1C3)-1(+CP)
29/11 Fusion1 antisense(pSB1C3)-4(+CP)
39/11 Fusion6 antisense(pSB1C3)-1(+CP)
49/4 pT181 attenuator(pSB1C3)-1(+CP)
59/10 Fusion1 attenuator(pSB1C3)-1(+CP)
69/11 Fusion3n2 attenuator(pSB1C3)-1(+CP)
79/4 aptamer12_1R(pSB1C3)-1(+CP)
89/11 aptamer12_P(pSB1C3)-3(+CP)
99/11 aptamer12_1M(pSB1C3)-1(+CP)

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NumberUse LB plate
18/29 Pbad/araC-RBS-RFP-DT-1(+CP)
29/4 RBS-lysis3-DT-3(+CP)
39/10 Pcon-pT181 attenuator-DT-1(+CP)
49/5 Ptet-pT181 antisense-1(+CP)
59/4aptamer 12_1R-DT-1(+CP)
69/5 Ptet-RBS-lacZα-DT-4(+CP)
78/10 RBS-lacI-DT-2(+CP)
88/29 Plux-RBS-GFP-DT-1(+CP)

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Restriction Enzyme Digestion

Noname

8/17 RBS-DTEcoRISpeIXbaIPstI BufferBSAMilliQtotal
2cuts(XbaI&PstI)8.10µL0µL1µL1µL3µL3µL13.9µL30µL
NC0.40µL0µL0µL0µL1µL1µL7.6µL10µL
8/17 RBS-DTEcoRISpeIXbaIPstIBufferBSAMilliQtotal
2cut(EcoRI&XbaI)16.21µL1µL0µL0µL3µL3µL5.8µL30µL
9/15 Pcon-pT181attenuatorEcoRISpeIXbaIPstI BufferBSAMilliQtotal
2cuts(EcoRI&PstI)121µL0µL0µL1µL3µL3µL10µL30µL
NC0.60µL0µL0µL0µL1µL1µL7.4µL10µL
8/20 Pcon=RBS-GFP-DT-1EcoRISpeIXbaIPstIBufferBSAMilliQtotal
2cut(EcoRI&XbaI)61µL0µL1µL0µL3µL3µL0µL14µL
NC0.30µL0µL0µL0µL1µL1µL7.3µL10µL
incubate 37°C 1hour

Electrophoresis

No name

LaneSampleEnzyme1Enzyme2
1RBS-GFP-DTXbaIPstI
2RBS-GFP-DT----
3RBS-GFP-DTEcoRIXbaI
41kbp ladder----
5Pcon-pT181attenuatorSpeIPstI
6Pcon-pT181attenuator----
7Pcon-RBs-GFP-DTEcoRIXbaI
8Pcon-RBs-GFP-DT----

Igku 9212.jpg

PCR

Nakamoto

Samplebase pair
Pcon-apt12_1R-DT(E-1A)50
Pcon-spinach-DT(E-1A)402
Pcon-pT181 attenuator(E-1A)400
DT(1-3)65
tetR aptamer 12_1R-DT(1-3)283
Pcon-pT181 attenuator(1-SA)303
spinach-DT(2-1)338
Pcon-pT181 attenuator(E-0)403
Pcon-pT181 attenuator(2-SA)403
spinach-DT(3-2)395
Ptet-PT181 anisense 400
PreDenatureDenatureAnnealingExtensioncycle
94°C98°C57°C68°C--
2min10s30s35s30cycles

Gel Extraction

No name

LaneDNAEnzyme
11kb ladder--
3RBS-GFP-DTX+P
4RBS-GFP-DTX+P
5RBS-GFP-DTX+P

Igku 9213.jpg
Igku 9214.jpg

Nameconcentration[µg/mL]260/280260/230
RBS-GFP-DT(X+P)14.81.740.47
RBS-GFP-DT(E+S)88.41.851.49
Pcon-RBS-GFP-DT(E+X)47.51.821.12