Neochr
![](https://static.igem.org/mediawiki/2013/2/2f/Mm1.jpg)
![](https://static.igem.org/mediawiki/2013/b/bf/Mm2.jpg)
![](https://static.igem.org/mediawiki/2013/5/5d/M4.jpg)
![](https://static.igem.org/mediawiki/2013/1/11/Mm3.jpg)
Neochr module uses public data from Saccharomyces Genome Database, Kyoto Encyclopedia of Genes and Genomes , E.coli genome project, Virulence Factors of Pathogenic Bacteria .
Neochr module would assist users to grab related genes in different pathways manually, to rewire genes’ relationship logically*, and to replace genes with ortholog that score higher*. Firstly, it would allow users to define gene order and orientation in DRAG&DROP way. Secondly, decoupled these genes if have overlap and make all genes are non-redundancy. Finally, add chromosome features to build a new chromosome and show in the JBrowse. Moreover, users can drag a window in the JBrowse and delete any gene in the window.
After constructing a new chromosome, the next step is NucleoMod module which is to modify CDS based on synonymous mutation.