Team:Paris Saclay/Modeling/FNR/hsimcode

From 2013.igem.org

//translation fnr to FNR inactived
fnr -> fnr + FNRi [Probability];
//2 FNRi bind
FNRi + FNRi -> FNRa [Probability];
//to many FNRa will reduce FNR production
FNRa + mfnr -> FNRa*mfnr [Probability];
FNRa*mfnr -> FNRa + mfnr [Probability];
//deactivation FNR
FNRa + o2 -> FNRi + FNRi [Probability];
//degradation FNR
FNRi + ClpXP -> ClpXP [Probability];
FNRa + proteinase1 -> proteinase1 [Probability];
//green reporter protein production
FNRa + FNRa -> FNRa_binded [Probability];
FNRa_binded -> FNRa + FNRa [Probability];
FNRa_binded + green_proteingreen_protein_gene -> FNRa_binded_green_proteingreen_protein_gene [Probability];
FNRa_binded_green_protein_gene -> FNRa_binded + green_protein_gene[Probability];
FNRa_binded_green_protein_gene -> green_protein + FNRa_binded_green_protein[Probability];
//red protein repression with 4 FNR activated
FNRa_binded + red_protein_gene -> FNRa_binded_red_protein_gene [Probability];
FNRa_binded_red_protein_gene + FNRa_binded_red_protein_gene -> repression_red_protein [Probability];
repression_red_protein -> FNRa_binded_red_protein_gene + FNRa_binded_red_protein_gene [Probability];
FNRa_binded_red_protein_gene -> FNRa_binded + red_protein_gene[Probability];
//production of red protein when aerobic
red_protein_gene + red_protein_gene -> red_protein_gene_binded[Probability];
red_protein_gene_binded -> red_protein_gene_binded + red_protein [Probability];
GPR_binded -> red_protein_gene + red_protein_gene[Probability];
//degradation of protein
red_protein + proteinase2 -> proteinase2 [Probability];
green_protein + proteinase3 -> proteinase3 [Probability];