Template:Kyoto/Notebook/Sep 2
From 2013.igem.org
Contents |
Sep 2
Colony PCR
Sample | base pair |
---|---|
9/1 RBS-lysis2-DT-(1) | 985 |
Ptet-RBS-lacZα-DT-(1) | 765 |
Plac-RBS-lacZα-DT-(1) | 765 |
Plac-RBS-lacZα-DT-(2) | 765 |
PreDenature | Denature | Annealing | Extension | cycle |
---|---|---|---|---|
94°C | 94°C | 55°C | 68°C | -- |
5min | 30s | 30s | 1min | 30cycles |
Electrophoresis
Lane | Sample | Enzyme1 | Enzyme2 |
---|---|---|---|
1 | 100bp ladder | ||
2 | 9/1 RBS-lysis2+DT -(1) | ||
3 | 9/1 Ptet+RBS-lacZα-DT -(1) | ||
4 | 9/1 Plac+RBS-lacZα-DT -(1) | ||
5 | 9/1 Plac+RBS-lacZα-DT -(2) | ||
6 | 100bp ladder |
Restriction Enzyme Digestion
pSB1C3-(1) | EcoRI | SpeI | XbaI | PstI | BufferB | BufferD | BSA | MilliQ | total | |
---|---|---|---|---|---|---|---|---|---|---|
2 cuts(EcoRI+SpeI) | 7µL | 1µL | 1µL | 0µL | 0µL | 3µL | 0µL | 0.3µL | 17.7µL | 30µL |
NC(EcoRI+SpeI) | 0.3µL | 0µL | 0µL | 0µL | 0µL | 1µL | 0µL | 0.1µL | 8.6µL | 10µL |
2 cuts(XbaI+PstI) | 7µL | 0µL | 0µL | 1µL | 1µL | 0µL | 3µL | 0.3µL | 17.7µL | 30µL |
NC(XbaI+PstI) | 0.3µL | 0µL | 0µL | 0µL | 0µL | 0µL | 1µL | 0.1µL | 8.6µL | 10µL |
8/21 tRMA-spinach(1) | EcoRI | SpeI | BufferB | BSA | MilliQ | total | |
---|---|---|---|---|---|---|---|
2 cuts | 8µL | 1.0µL | 1.0µL | 3µL | 0.3µL | 17.6µL | 30µL |
NC | 0.5µL | 0µL | 0µL | 1µL | 0.1µL | 8.4µL | 10µL |
8/21 tetR aptamer12_1R-(1) | EcoRI | SpeI | BufferB | BSA | MilliQ | total | |
---|---|---|---|---|---|---|---|
2 cuts | 6µL | 1.0µL | 1.0µL | 3µL | 0.3µL | 18.7µL | 30µL |
NC | 0.4µL | 0µL | 0µL | 1µL | 0.1µL | 8.5µL | 10µL |
8/21 pT181 attenuator-(2) | EcoRI | SpeI | XbaI | PstI | BufferB | BufferD | BSA | MilliQ | total | |
---|---|---|---|---|---|---|---|---|---|---|
2 cuts(EcoRI+SpeI) | 8µL | 1µL | 1µL | 0µL | 0µL | 3µL | 0µL | 0.3µL | 16.3µL | 30µL |
NC(EcoRI+SpeI) | 0.5µL | 0µL | 0µL | 0µL | 0µL | 1µL | 0µL | 0.1µL | 8.4µL | 10µL |
2 cuts(XbaI+PstI) | 8µL | 0µL | 0µL | 1µL | 1µL | 0µL | 3µL | 0.3µL | 16.3µL | 30µL |
NC(XbaI+PstI) | 0.5µL | 0µL | 0µL | 0µL | 0µL | 0µL | 1µL | 0.1µL | 8.4µL | 10µL |
Liquid Culture
Sample | medium |
---|---|
tRNA-Spinach-1 | Plusgrow medium(+CP) |
tetR aptamaer12_1R-1 | Plusgrow medium(+CP) |
pT181 attenuator-1 | Plusgrow medium(+CP) |
pT181 antisense-1 | Plusgrow medium(+CP) |
Master Plate
Number | Use LB plate(+CP) |
---|---|
1 | tRNA Spinach-1 |
2 | tetR aptamaer12_1R |
3 | tetR aptamaer12_P |
4 | tetR aptamaer12_1M |
5 | pT181 attenuator-2 |
6 | Fusion1 attenuator-1 |
7 | Fusion3m2 attenuator-1 |
8 | pT181 antisense-1 |
9 | Fusion1 antisense-1 |
10 | Fuaion6 antisense-1 |
Electrophoresis
Lane | Sample | Enzyme1 | Enzyme2 |
---|---|---|---|
1 | 100bp ladder | -- | -- |
2 | pSB1C3 -(1) | EcoRI | SpeI |
3 | pSB1C3 -(1) | -- | -- |
5 | pSB1C3 -(1) | XbaI | PstI |
6 | pSB1C3 -(1) | -- | -- |
7 | pT181 attenuator (2) | EcoRI | SpeI |
8 | pT181 attenuator (2) | -- | -- |
9 | pT181 attenuator (2) | XbaI | SpeI |
10 | pT181 attenuator (2) | -- | -- |
11 | tetR-aptamer 12_1R | EcoRI | SpeI |
12 | tetR-aptamer 12_1R | -- | -- |
13 | tRNA Spinach (1) | EcoRI | SpeI |
14 | 100bp ladder | -- | -- |
15 | tRNA Spinach (1) | -- | -- |
Gel Extraction
Lane | DNA | Enzyme |
---|---|---|
1 | 100bp ladder | - |
2 | pSB1C3(EcoRI+SpeI) | EcoRI&SpeI |
3 | ||
4 | -- | -- |
5 | 8/24 tetR aptamer 12_1R | EcoRI&SpeI |
6 |
Lane | DNA | Enzyme |
---|---|---|
1 | 100bp ladder | - |
2 | pT181 attenuator(2)(EcoRI+SpeI) | EcoRI&SpeI |
3 | ||
4 | -- | -- |
5 | pT181 attenuator(2)(XbaI+PstI) | EcoRI&SpeI |
6 | ||
7 | -- | -- |
8 | pT181 attenuator(2)(XbaI+PstI) | EcoRI&SpeI |
9 | ||
10 | -- | -- |
11 | Spinach | EcoRI&SpaI |
12 |
Name | concentration[µg/mL] | 260/280 | 260/230 |
---|---|---|---|
pSB1C3 (EcoRI&SpeI) | 3.0 | 2.18 | 0.31 |
pSB1C3 (XbaI&PstI) | 4.7 | 2.25 | 0.36 |
pT181 attenuator-(2)(EcoR&SpeI) | 8.6 | 2.74 | 0.01 |
pT181 attenuator-(2) (XbaI&PstI) | 16.5 | 2.46 | 0.03 |
Spinach (EcoRI&SpeI) | 2.8 | 2.98 | 0.27 |
tetR aptamer12_1R (EcoRI&SpeI) | 50.4 | 28.07 | 1.97 |
Colony PCR
Sample | base pair |
---|---|
9/1 Spinach(pSB1C3) | about 450 |
9/1 Spinach-DT | 596 |
9/1 RBS-lysis1-DT | 613 |
PreDenature | Denature | Annealing | Extension | cycle |
---|---|---|---|---|
94°C | 94°C | 55°C | 68°C | -- |
5min | 30s | 30s | 40s | 30cycles |
Sample | base pair |
---|---|
9/1 Ptet-RBS-lacZα-DT-2 | 738 |
9/1 Ptet-RBS-lacZα-DT-3 | 738 |
9/1 Ptet-RBS-lacZα-DT-4 | 738 |
9/1 Ptet-RBS-lacZα-DT-5 | 738 |
9/1 Ptet-RBS-lacZα-DT-6 | 738 |
9/1 RBS-lysis2-DT-2 | 985 |
9/1 RBS-lysis2-DT-3 | 985 |
PreDenature | Denature | Annealing | Extension | cycle |
---|---|---|---|---|
94°C | 94°C | 55°C | 68°C | -- |
5min | 30s | 30s | 1min | 30cycles |
Master Plate
Number | Use LB plate(+CP) |
---|---|
1 | 9/1 Spinach(pSB1C3) |
2 | 9/1 Spinach-DT-(1) |
Liquid Culture
Sample | medium |
---|---|
pT181 attenuator | Plusgrow medium (+CP) |
pT181 antisense | Plusgrow medium (+CP) |
Spinach | Plusgrow medium (+CP) |
- incubated at 37 °C for 1 hour
Transformation
Name | Sample | Competent Cells | Total | Plate |
---|---|---|---|---|
8/28 RBS-lysis3-DT | 3µL | 30µL | 33µL | CP |