Template:Kyoto/Notebook/Sep 24
From 2013.igem.org
Sep 24
Electrophoresis
Lane | Sample |
---|---|
1 | 9/20 Pcon-pT181aptamer12-1R-DT 1 |
2 | 9/20 Pcon-pT181aptamer12-1R-DT 2 |
3 | 9/20 Pcon-pT181aptamer12-1R-DT 3 |
4 | 9/20 Pcon-pT181aptamer12-1R-DT 4 |
5 | 9/20 Pcon-pT181aptamer12-1R-DT 5 |
6 | 9/20 Pcon-pT181aptamer12-1R-DT 6 |
7 | 9/20 Pcon-pT181aptamer12-1R-DT 7 |
8 | 9/20 Pcon-pT181aptamer12-1R-DT 8 |
9 | 100bp ladder |
10 | 9/22 Pcon-pT181attenuator-aptamer12-1R-DT 1 |
11 | 9/22 Pcon-pT181attenuator-aptamer12-1R-DT 2 |
12 | 9/22 Pcon-pT181attenuator-aptamer12-1R-DT 3 |
13 | 9/22 Pcon-pT181attenuator-aptamer12-1R-DT 4 |
14 | 9/20 Plac-aptamer12-1R-DT 1 |
15 | 9/20 Plac-aptamer12-1R-DT 2 |
16 | 9/20 Plac-aptamer12-1R-DT 3 |
17 | 9/20 Plac-aptamer12-1R-DT 4 |
Transformation
Name | Sample | Competent Cells | Total | Plate |
---|---|---|---|---|
9/23 pSB1C3-pT181attenuator | 2 µL | 20 µL | 22 µL | LB (+CP) |
RBS-GFP-DT+Pcon-pT181attenuator | 2 µL | 20 µL | 22 µL | LB (+CP) |
9/23 Plac-+spinach-DT | 2 µL | 20 µL | 22 µL | LB (+Amp) |
9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT | 2 µL | 20 µL | 22 µL | LB (+Amp) |
9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT | 2 µL | 20 µL | 22 µL | LB (+Amp) |
9/23 Pcon-RBS-tetR-DT+Pcon-RBS-GFP-DT | 2 µL | 20 µL | 22 µL | LB (+Amp) |
9/23 Pcon-pT181antisense-DT | 2 µL | 20 µL | 22 µL | LB (+CP) |
9/23 Pcon-pT181attenuator-RBS-GFP-DT | 2 µL | 20 µL | 22 µL | LB (+CP) |
9/23 Pcon-pT181attenuator-aptamer12-1R-DT | 2 µL | 20 µL | 22 µL | LB (+CP) |
PUC19 | 2 µL | 20 µL | 22 µL | LB (+Amp) |
Ptet-RBS-lacZα-DT | 2 µL | 20 µL | 22 µL | LB (+CP) |
pSB1C3 | 2 µL | 20 µL | 22 µL | LB (+CP) |
Liquid Culture
Sample | medium |
---|---|
aptamer12-1R-DT(Master plate) | LB(+CP) |
Restriction Enzyme Digestion(PCR product)
Concentrate PCR product by evaporator until volume become less than 1µL, add all sulution and pipetting.
10*cut smart buffer | BsaI-HF | MilliQ | total | |
---|---|---|---|---|
9/22 Pcon-pT181 attenuator (E-0) | 2.0 µL | 0.3 µL | 17 µL | 19.3µL |
9/22 Pcon-pT181 attenuator (2-3A) | 2.0 µL | 0.3 µL | 17 µL | 19.3µL |
9/22 spinach-DT(3-2) | 2.0 µL | 0.3 µL | 17 µL | 19.3µL |
9/22 Ptet-pT181 antisense (1-3) | 2.0 µL | 0.3 µL | 17 µL | 19.3µL |
9/22 Pcon-tet aptamer-DT (E-1A) | 2.0 µL | 0.3 µL | 17 µL | 19.3µL |
9/22 Pcon-spinach-DT (E-1A) | 2.0 µL | 0.3 µL | 17 µL | 19.3µL |
9/22 Pcon-pT181 attenuator (E-1A) | 2.0 µL | 0.3 µL | 17 µL | 19.3µL |
9/22 DT (1-3) | 2.0 µL | 0.3 µL | 17 µL | 19.3µL |
9/22 tet aptamer-DT (1-3) | 2.0 µL | 0.3 µL | 17 µL | 19.3µL |
9/22 Pcon-pT181 attenuator (1-SA) | 2.0 µL | 0.3 µL | 17 µL | 19.3µL |
9/22 Pcon-RBS-tetR-DT (1-2A) | 2.0 µL | 0.3 µL | 17 µL | 19.3µL |
9/22 Pcon-RBS-tetR-DT (3-2A) | 2.0 µL | 0.3 µL | 17 µL | 19.3µL |
9/22 Pcon-RBS-tetR-DT (E-2A) | 2.0 µL | 0.3 µL | 17 µL | 19.3µL |
9/22 Pcon-RBS-GFP-DT (1-2A) | 2.0 µL | 0.3 µL | 17 µL | 19.3µL |
9/22 Pcon-pT181 attenuator (E-0) | 2.0 µL | 0.3 µL | 17 µL | 19.3µL |
9/22 Pcon-pT181 attenuator (E-0) | 2.0 µL | 0.3 µL | 17 µL | 19.3µL |
9/22 Pcon-pT181 attenuator (E-0) | 2.0 µL | 0.3 µL | 17 µL | 19.3µL |
9/22 Pcon-pT181 attenuator (E-0) | 2.0 µL | 0.3 µL | 17 µL | 19.3µL |
9/22 Pcon-pT181 attenuator (E-0) | 2.0 µL | 0.3 µL | 17 µL | 19.3µL |
9/22 Pcon-pT181 attenuator (E-0) | 2.0 µL | 0.3 µL | 17 µL | 19.3µL |
9/22 Pcon-pT181 attenuator (E-0) | 2.0 µL | 0.3 µL | 17 µL | 19.3µL |
Incubate 37°C 12hour</div>
Transformation
Name | Sample | Competent Cells | Total | Plate |
---|---|---|---|---|
9/23 Pcon-attenuator-aptamer12-1R-DT | 2 µL | 20 µL | 22 µL | LB (+CP) |
9/23 pT181attenuator(1C3) | 2 µL | 20 µL | 22 µL | LB (+CP) |
9/23 Pcon-pT181antisense-DT | 2 µL | 20 µL | 22 µL | LB (+CP) |
9/23 Pcon-pT181attenuator-RBS--GFP-DT | 2 µL | 20 µL | 22 µL | LB (+CP) |
Liquid Culture
Sample | medium |
---|---|
pSB1C3 (Master plate-1) | LB(+CP) |
Restriction Enzyme Digestion
8/21 pT181attenuator (330 µg/mL) | XbaI | PstI | buffer | BSA | MilliQ | total | |
---|---|---|---|---|---|---|---|
2 cuts | 6.1 | 1 | 1 | 3 | 3 | 15.9 | 30 |
NC | 0.3 | 0 | 0 | 1 | 1 | 7.7 | 10 |
9/22 Pcon-pT181attenuator (368.3 µg/mL) | EcoRI | SpeI | buffer | BSA | MilliQ | total | |
---|---|---|---|---|---|---|---|
2 cuts | 5.4 | 1 | 1 | 3 | 0 | 19.6 | 30 |
NC | 0.3 | 0 | 0 | 1 | 0 | 8.7 | 10 |
9/16 pSB1C3 | EcoRI | SpeI | buffer | BSA | MilliQ | total | |
---|---|---|---|---|---|---|---|
2 cuts | 18 | 1 | 1 | 3 | 0 | 7.0 | 30 |
NC | 0.9 | 0 | 0 | 1 | 0 | 8.1 | 10 |
Electrophoresis
Lane | Sample | Enzyme1 | Enzyme2 |
---|---|---|---|
1 | 1kb ladder | - | - |
2 | pT181attenuator | XbaI | PstI |
3 | pT181attenuator | -- | -- |
4 | Pcon-pT181attenuator | EcoRI | SpeI |
5 | Pcon-pT181attenuator | -- | -- |
6 | pSB1C3 | EcoRI | SpeI |
7 | pSB1C3 | -- | -- |
Miniprep
DNA | concentration[µg/mL] | 260/280 | 260/230 |
---|---|---|---|
9/24 aptamer12-1R-DT | 144.7 | 1.03 | 1.21 |
Gel Extraction
Lane | DNA | Enzyme1 | Enzyme2 |
---|---|---|---|
1 | 100kb ladder | -- | -- |
2 | pT181attenuator | XbaI | PstI |
3 | pT181attenuator | XbaI | PstI |
4 | pT181attenuator | XbaI | PstI |
5 | -- | -- | -- |
6 | Pcon-pT181attenuator | EcoRI | SpeI |
7 | Pcon-pT181attenuator | EcoRI | SpeI |
8 | Pcon-pT181attenuator | EcoRI | SpeI |
9 | -- | -- | -- |
10 | pSB1C3 | EcoRI | SpeI |
11 | pSB1C3 | EcoRI | SpeI |
12 | pSB1C3 | EcoRI | SpeI |
Name | concentration[µg/mL] | 260/280 | 260/230 |
---|---|---|---|
pT181attenuator(XbaI&PstI) | 10.1 | 2.02 | 0.43 |
Pcon-pT181attenuator(EcoRI&SpeI) | 10.3 | 1.81 | 0.32 |
pSB1C3(EcoRI&SpeI) | 10.0 | 2.81 | 0.02 |
Colony PCR
Sample | base pair |
---|---|
9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 1 | 1414 |
9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 2 | 1414 |
9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 3 | 1414 |
9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 4 | 1414 |
9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 5 | 1414 |
9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 6 | 1414 |
9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 7 | 1414 |
9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 8 | 1414 |
9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 1 | 1631 |
9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 2 | 1631 |
9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 3 | 1631 |
9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 4 | 1631 |
9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 5 | 1631 |
9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 6 | 1631 |
9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 7 | 1631 |
9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 8 | 1631 |
9/23 Pcon-RBS-tetR-DT+Pcon-RBS-GFP-DT 1 | 2042 |
9/23 Pcon-RBS-tetR-DT+Pcon-RBS-GFP-DT 2 | 2042 |
9/23 Pcon-RBS-tetR-DT+Pcon-RBS-GFP-DT 3 | 2042 |
9/23 Pcon-RBS-tetR-DT+Pcon-RBS-GFP-DT 4 | 2042 |
9/23 Pcon-pT181antisense-DT 1 | 508 |
9/23 Pcon-pT181antisense-DT 2 | 508 |
9/23 Pcon-pT181antisense-DT 3 | 508 |
9/23 Pcon-pT181antisense-DT 4 | 508 |
9/23 Pcon-pT181antisense-DT 5 | 508 |
9/23 Pcon-pT181antisense-DT 6 | 508 |
9/23 Pcon-pT181antisense-DT 7 | 508 |
9/23 Pcon-pT181antisense-DT 8 | 508 |
PreDenature | Denature | Annealing | Extension | cycle |
---|---|---|---|---|
94 °C | 94 °C | 55 °C | 68 °C | -- |
5 min | 30 sec | 30 sec | 2min | 30 cycles |
Lane | Sample |
---|---|
1 | 9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 1 |
2 | 9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 2 |
3 | 9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 3 |
4 | 9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 4 |
5 | 9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 5 |
6 | 9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 6 |
7 | 9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 7 |
8 | 9/23 Pcon-aptamer12-1R-DT+Pcon-RBS-GFP-DT 8 |
9 | 1kb ladder |
10 | 9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 1 |
11 | 9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 2 |
12 | 9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 3 |
13 | 9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 4 |
14 | 9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 5 |
15 | 9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 6 |
16 | 9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 7 |
17 | 9/23 Pcon-pT181attenuator-DT+Pcon-RBS-GFP-DT 8 |
Lane | Sample |
---|---|
1 | 9/23 Pcon-RBS-tetR-DT+Pcon-RBS-GFP-DT 1 |
2 | 9/23 Pcon-RBS-tetR-DT+Pcon-RBS-GFP-DT 2 |
3 | 9/23 Pcon-RBS-tetR-DT+Pcon-RBS-GFP-DT 3 |
4 | 9/23 Pcon-RBS-tetR-DT+Pcon-RBS-GFP-DT 4 |
5 | 9/23 Pcon-pT181antisense-DT 1 |
6 | 9/23 Pcon-pT181antisense-DT 2 |
7 | 1kb ladder |
8 | 9/23 Pcon-pT181antisense-DT 3 |
9 | 9/23 Pcon-pT181antisense-DT 4 |
10 | 9/23 Pcon-pT181antisense-DT 5 |
11 | 9/23 Pcon-pT181antisense-DT 6 |
12 | 9/23 Pcon-pT181antisense-DT 7 |
13 | 9/23 Pcon-pT181antisense-DT 8 |
14 | -- |
Restriction Enzyme Digestion
9/24 aptamer12-1R-DT | EcoRI | XbaI | buffer | BSA | MilliQ | total | |
---|---|---|---|---|---|---|---|
2cuts | 17.5µL | 1.0µL | 1.0µL | 3.0µL | 3.0µL | 4.5µL | 30µL |
NC | 0.9µL | 0µL | 0µL | 1.0µL | 1.0µL | 7.1µL | 10µL |
9/20 Ptet | SpeI | PstI | buffer | BSA | MilliQ | total | |
---|---|---|---|---|---|---|---|
2cuts | 9.5µL | 1.0µL | 1.0µL | 3.0µL | 0µL | 15.5µL | 30µL |
NC | 0.5µL | 0µL | 0µL | 1.0µL | 0µL | 8.5µL | 10µL |
9/22 RBS-GFP-DT | EcoRI | SpeI | buffer | BSA | MilliQ | total | |
---|---|---|---|---|---|---|---|
2cuts | 3.8µL | 1.0µL | 1.0µL | 3.0µL | 0µL | 21.2µL | 30µL |
NC | 0.2µL | 0µL | 0µL | 1.0µL | 0µL | 8.8µL | 10µL |
9/22 Pcon-RBS-GFP-DT | EcoRI | XbaI | buffer | BSA | MilliQ | total | |
---|---|---|---|---|---|---|---|
2cuts | 2.4µL | 1.0µL | 1.0µL | 3.0µL | 3.0µL | 19.6µL | 30µL |
NC | 0.1µL | 0µL | 0µL | 1.0µL | 1.0µL | 7.9µL | 10µL |
9/22 Pcon-pT181attenuator 1 | EcoRI | XbaI | buffer | BSA | MilliQ | total | |
---|---|---|---|---|---|---|---|
2cuts | 5.4µL | 1.0µL | 1.0µL | 3.0µL | 3.0µL | 16.6µL | 30µL |
NC | 0.3µL | 0µL | 0µL | 1.0µL | 1.0µL | 7.7µL | 10µL |
9/22 RBS-GFP-DT | XbaI | PstI | buffer | BSA | MilliQ | total | |
---|---|---|---|---|---|---|---|
2cuts | 3.8µL | 1.0µL | 1.0µL | 3.0µL | 3.0µL | 18.2µL | 30µL |
NC | 0.2µL | 0µL | 0µL | 1.0µL | 1.0µL | 7.8µL | 10µL |
Ligation
state | Vector | Inserter | Ligation High ver.2 | ||
---|---|---|---|---|---|
9/22 aptamer12-1R-DT(EcoRI&XbaI) | 1.4 µL | 9/24 Pcon-pT181attenuator(EcoRI&SpeI) | 26 µL | 3.5 µL | |
9/4 Ptet(SpeI&PstI) | 2.0 µL | 9/21 RBS-GFP-DT(XbaI&PstI) | 9.0 µL | 3.5 µL |
- incubated at 37 °C for 1 hour.
colony PCR
Sample | base pair |
---|---|
9/23 Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 5 | 2042bp |
9/23 Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 6 | 2042bp |
9/23 Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 7 | 2042bp |
9/23 Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 8 | 2042bp |
9/23 Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 9 | 2042bp |
9/23 Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 10 | 2042bp |
9/23 Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 11 | 2042bp |
9/23 Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 12 | 2042bp |
9/23 Pcon-pT181antisense-DT 9 | 508bp |
9/23 Pcon-pT181antisense-DT 10 | 508bp |
9/23 Pcon-pT181antisense-DT 11 | 508bp |
9/23 Pcon-pT181antisense-DT 12 | 508bp |
9/23 Pcon-pT181antisense-DT 13 | 508bp |
9/24 Pcon-pT181attenuator-RBS-GFP-DT 1 | 1527bp |
9/24 Pcon-pT181attenuator-RBS-GFP-DT 2 | 1527bp |
9/24 Pcon-pT181attenuator-RBS-GFP-DT 3 | 1527bp |
9/24 Pcon-pT181attenuator-RBS-GFP-DT 4 | 1527bp |
9/24 Pcon-pT181attenuator-aptamer12-1R-DT 1 | 859bp |
9/24 Pcon-pT181attenuator-aptamer12-1R-DT 2 | 859bp |
9/24 Pcon-pT181attenuator-aptamer12-1R-DT 3 | 859bp |
9/24 Pcon-pT181attenuator-aptamer12-1R-DT 4 | 859bp |
9/24 pT181attenuator(pSB1C3) 1 | 390bp |
9/24 pT181attenuator(pSB1C3) 2 | 390bp |
9/24 pT181attenuator(pSB1C3) 3 | 390bp |
9/24 pT181attenuator(pSB1C3) 4 | 390bp |
PreDenature | Denature | Annealing | Extension | cycle |
---|---|---|---|---|
94°C | 94°C | 55°C | 68°C | -- |
5min | 30s | 30s | 2min | 30cycle |
Miniprep
DNA | concentration[µg/mL] | 260/280 | 260/230 |
---|---|---|---|
pSB1C3 | 183.9 | 1.91 | 1.59 |
Pcon-pT181attenuator-aptamer12-1R-DT | 231.7 | 1.82 | 2.35 |
Plac-aptamer12-1R-DT | 208.9 | 1.98 | 1.79 |
Electrophoresis
Lane | Sample | Enzyme1 | Enzyme2 |
---|---|---|---|
1 | 1kb ladder | -- | -- |
2 | 9/24 aptamer12-1R-DT | EcoRI | XbaI |
3 | 9/24 aptamer12-1R-DT | -- | -- |
4 | 9/24 Ptet | SpeI | PstI |
5 | 9/24 Ptet | -- | -- |
6 | 9/24 RBS-GFP-DT | EcoRI | SpeI |
7 | 9/24 RBS-GFP-DT | -- | -- |
8 | 9/24 Pcon-RBS-GFP-DT | EcoRI | XbaI |
8 | 9/24 Pcon-RBS-GFP-DT | -- | -- |
9 | 9/24 Pcon-RBS-GFP-DT | -- | -- |
10 | 9/24 Pcon-pT181attenuator 1 | EcoRI | XbaI |
11 | 9/24 Pcon-pT181attenuator 1 | -- | -- |
12 | 9/24 RBS-GFP-DT | XbaI | PstI |
13 | 9/24 RBS-GFP-DT | -- | -- |
14 | 1kb ladder | -- | -- |
Gel Extraction
Lane | DNA | Enzyme1 | Enzyme2 |
---|---|---|---|
1 | 1kb ladder | -- | -- |
2 | aptamer12-1R-DT | EcoRI | XbaI |
3 | aptamer12-1R-DT | EcoRI | XbaI |
4 | aptamer12-1R-DT | EcoRI | XbaI |
5 | -- | -- | -- |
6 | Ptet | SpeI | PstI |
7 | Ptet | SpeI | PstI |
8 | Ptet | SpeI | PstI |
9 | -- | -- | -- |
10 | RBS-GFP-DT | EcoRI | SpeI |
11 | RBS-GFP-DT | EcoRI | SpeI |
12 | RBS-GFP-DT | EcoRI | SpeI |
Lane | DNA | Enzyme1 | Enzyme2 |
---|---|---|---|
1 | 1kb ladder | -- | -- |
2 | Pcon-RBS-GFP-DT | EcoRI | XbaI |
3 | Pcon-RBS-GFP-DT | EcoRI | XbaI |
4 | Pcon-RBS-GFP-DT | EcoRI | XbaI |
5 | -- | -- | -- |
6 | Pcon-pT181attenuator | EcoRI | XbaI |
7 | Pcon-pT181attenuator | EcoRI | XbaI |
8 | Pcon-pT181attenuator | EcoRI | XbaI |
9 | -- | -- | -- |
10 | RBS-GFP-DT | XbaI | PstI |
11 | RBS-GFP-DT | XbaI | PstI |
12 | RBS-GFP-DT | XbaI | PstI |
Electrophoresis
1
Lane | Sample |
---|---|
1 | 1kb ladder |
2 | Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 5 |
3 | Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 6 |
4 | Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 7 |
5 | Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 8 |
6 | Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 9 |
7 | Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 10 |
8 | 1kb ladder |
2
Lane | Sample |
---|---|
1 | 1kb ladder |
2 | Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 11 |
3 | Pcon-RBS-tetR-DT-Pcon-RBS-GFP-DT 12 |
4 | Pcon-pT181attenuator-RBS-GFP-DT 1 |
5 | Pcon-pT181attenuator-RBS-GFP-DT 2 |
6 | Pcon-pT181attenuator-RBS-GFP-DT 3 |
7 | Pcon-pT181attenuator-RBS-GFP-DT 4 |
8 | 1kb ladder |
3
Lane | Sample |
---|---|
1 | Pcon-pT181antisense-DT 9 |
2 | Pcon-pT181antisense-DT 10 |
3 | Pcon-pT181antisense-DT 11 |
4 | Pcon-pT181antisense-DT 12 |
5 | Pcon-pT181antisense-DT 13 |
6 | 100bp ladder |
7 | Pcon-pT181attenuator-aptamer12-1R-DT 1 |
8 | Pcon-pT181attenuator-aptamer12-1R-DT 2 |
4
Lane | Sample |
---|---|
1 | Pcon-pT181attenuator-aptamer12-1R-DT 3 |
2 | Pcon-pT181attenuator-aptamer12-1R-DT 4 |
3 | 100bp ladder |
4 | pT181attenuator(pSB1C3) 1 |
5 | pT181attenuator(pSB1C3) 2 |
6 | pT181attenuator(pSB1C3) 3 |
7 | pT181attenuator(pSB1C3) 4 |
PCR
genome DNA | KOD plus | 10x buffer | dNTP | MgSO4 | F primer | R primer | KOD-plus | MilliQ | total |
---|---|---|---|---|---|---|---|---|---|
Pcon antisense(1C3-GGE-fwd,1A2-GG2-rev) | 1µL | 2.5µL | 2.5µL | 1.5µL | 0.75µL | 0.75µL | 0.5µL | 15.5 | 25µL |
DT-(1C3-GG1-fwd,1C3-GG2-rev) | 1µL | 2.5µL | 2.5µL | 1.5µL | 0.75µL | 0.75µL | 0.5µL | 15.5 | 25µL |
Spinach-DT-(1C3-GG1-fwd,1C3-GG2-rev) | 1µL | 2.5µL | 2.5µL | 1.5µL | 0.75µL | 0.75µL | 0.5µL | 15.5 | 25µL |
Pcon-antisense-spinach-DT(1C3-GGE-fwd,1A2-GG1-rev) | 1µL | 2.5µL | 2.5µL | 1.5µL | 0.75µL | 0.75µL | 0.5µL | 15.5 | 25µL |
Ptet(1C3-GGE-fwd,1C3-GG0-rev) | 1µL | 2.5µL | 2.5µL | 1.5µL | 0.75µL | 0.75µL | 0.5µL | 15.5 | 25µL |
Pcon attenuator(1C3-GGE-fwd,1C3-GG0-rev) | 1µL | 2.5µL | 2.5µL | 1.5µL | 0.75µL | 0.75µL | 0.5µL | 15.5 | 25µL |
DT(1C3-GG2-fwd,1C3-GG1-rev) | 1µL | 2.5µL | 2.5µL | 1.5µL | 0.75µL | 0.75µL | 0.5µL | 15.5 | 25µL |
PreDenature | Denature | Annealing | Extension | cycle |
---|---|---|---|---|
94°C | 98°C | 57°C | 68°C | -- |
2min | 10sec | 30sec | 36sec | 30 |
Ligation
state | Vector | Inserter1 | Inserter2 | Inserter3 | Inserter4 | (NEB)T4ligase | (NEB)Buffer | milliQ | total | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
RBS-GFP-DT(pSB1C3) | 1µL | tetR-aptamer12-1R-DT(1-3) | 1 µL | Ptet(2-S) | 0.3µL | Pcon-tetR-aptamer12-1R-DT(3-2A) | 1.1µL | Plac(E-1A) | 0.5µL | 0.5µL | 0.5µL | 0.2 µL | 5µL | |
RBS-GFP-DT(pSB1C3) | 1µL | Pcon-pT181attenuator(E-1A) | 1 µL | Pcon-tetR-aptamer12-1R-DT(1-2A) | 1µL | Ptet(2-S) | 0.3µL | -- | -- | 0.5µL | 0.5µL | 0.7 µL | 5µL | |
RBS-GFP-DT(pSB1C3) | 1µL | Pcon-tetRaptamer12-1R-DT(E-1A) | 2µL | Pcon-tetRaptamer12-1R-DT(1-2A) | 1µL | Ptet(2-S) | 0.3µL | -- | -- | 0.5µL | 0.5µL | 0 µL | 5.3µL | |
RBS-GFP-DT(pSB1C3) | 1µL | Pcon-spinach-DT(E-1A) | 3µL | Pcon-tetRaptamer12-1R-DT(1-2A) | 1µL | Ptet(2-S) | 0.3µL | -- | -- | 0.5µL | 0.5µL | 0 µL | 6.3µL | |
RBS-GFP-DT(pSB1C3) | 1µL | Pcon-pT181antisense-DT(E-1A) | 0.5µL | DT(1-3) | 2µL | Ptet(2-S) | 0.3µL | Pcon-tetRaptamer12-1R-DT(3-2A) | 1.1µL | 0.5µL | 0.5µL | 0.1 µL | 5µL | |
RBS-GFP-DT(pSB1C3) | 1µL | Pcon-pT181attenuator(E-1A) | 1µL | tetRaptamer12-1R-DT(1-3) | 1µL | Ptet(2-S) | 0.3µL | Pcon-tetRaptamer12-1R-DT(3-2A) | 1.1µL | 0.5µL | 0.5µL | 0µL | 5.4µL | |
RBS-GFP-DT(pSB1C3) | 1µL | Ptet(2-S) | 0.3µL | Pcon-tetRaptamer12-1R-DT(E-2A) | 1µL | -- | -- | -- | -- | 0.5µL | 0.5µL | 1.7µL | 5µL | |
RBS-GFP-DT(pSB1C3) | 1µL | Pcon-GFP-DT(2-SA) | 0.5µL | 1µL | -- | -- | -- | -- | -- | 0.5µL | 0.5µL | 1.5µL | 5µL | |
RBS-GFP-DT(pSB1C3) | 1µL | Pcon-tetRaptamer12-1R-DT(E-1A) | 2µL | Pcon-pT181attenuator(1-SA) | 2.1µL | -- | -- | -- | -- | 0.5µL | 0.5µL | 0µL | 6.1µL | |
RBS-GFP-DT(pSB1C3) | 1µL | Pcon-pT181attenuator-DT(E-1A) | 1µL | Pcon-pT181attenuator(1-SA) | 2.1µL | -- | -- | -- | -- | 0.5µL | 0.5µL | 0µL | 5.1µL | |
RBS-GFP-DT(pSB1C3) | 1µL | Pcon-tetR12-1R-DT(E-1A) | 2µL | Pcon-GFP-DT(2-SA) | 0.5µL | spinach-DT(3-2) | 1µL | Ptet-pT181antisense(1-3) | 1µL | 0.5µL | 0.5µL | 0µL | 6.5µL | |
RBS-GFP-DT(pSB1C3) | 1µL | Pcon-tetRaptamer12-1R-DT(E-1A) | 2µL | Pcon-pT181antisense(1-2A) | 0.7µL | Pcon-pT181attenuator(2-SA) | 2.1µL | -- | -- | 0.5µL | 0.5µL | 0µL | 6.8µL | |
RBS-GFP-DT(pSB1C3) | 1µL | Pcon-tetRaptamer12-1R-DT(E-1A) | 2µL | Pcon-pT181attenuator(2-SA) | 2.1µL | Spinach-DT(3-2) | 1µL | Ptet-pT181antisense(1-3) | 1µL | 0.5µL | 0.5µL | 0µL | 8.1µL |
Concentrate total (more than 5µL) by evaporater until volume become less than 5 µL