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From 2013.igem.org

Contents 1 208 lab 1.1 Main purposes today 1.1.1 x7 mastermix for 16rxn 1.1.2 PHUSION mastermix for 20rxn 1.2 Who was in the lab 1.3 Procedure 1.4 Conclusion from today

208 lab

Main purposes today

helloworld-project

• 25 rxns including duplicates

• 34 rxna including duplicates with the following setup:

Tube 1-6 containing 5uL pZA21 plasmid template and 3uL of each primers for amplification of the backbone. Tube 7-10; 1uL g-Block from previous purification and 3uL of each Sec signal primers. Tube 11-14 containing same amount of g-Block and primers but now replaced with the TAT2 signal primers. Tube 15-18; 5uL GFP SF plasmid template and 3uL of each primers for GFP SF TAT. Tube 19-22; 5uL GFP SF plasmid template and 3uL of each primers for GFP SF Sec. Tube 23-26; 5uL RFP plasmid template and 3uL of each primer for RFP. Tube 27-30; 1uL g-Block purification and 3uL of each TAT3 primers. Tube 31-34; 0.5uL of the original g-Block and 3uL of each primers for amplifying the g-Block. All tube with less than 5uL template DNA was filled with MQ until final volume of 11uL(5+3+3).

First half of the samples where run on PCR with x7-polymerase and the second half where run with PHUSION-polymerase, with the exception of the g-Block where all reactions where run with PHUSION. This gives following setup: x7-poly in tube:

• 1-3, 7-8, 11-12, 15-16, 19-20, 23-24, 27-28

PHUSION in tube:

• 4-6, 9-10, 13-14, 17-18, 21-22, 25-26, 29-30, 31-34

A mastermix was made for both PCR with standard concentration setup and one additional volume for pipetting errors:

x7 mastermix for 16rxn

• 160uL HF buffer
• 16uL dNTP's 10mM
• 8uL x7 polymerase
• 440uL MQ

PHUSION mastermix for 20rxn

• 200uL HF buffer
• 20uL dNTP's 10mM
• 10uL x7 polymerase
• 5500uL MQ

The tubes were run on two programs simultaneously

Who was in the lab

Henrike, Jakob, Kristian

Procedure

PCR for 7 fragments:

Conclusion from today