Team:Paris Saclay/Modeling/FNR/hsimcode

From 2013.igem.org

//translation fnr to FNR inactived fnr -> fnr + FNRi [Probability]; //2 FNRi bind FNRi + FNRi -> FNRa [Probability]; //to many FNRa will reduce FNR production FNRa + mfnr -> FNRa*mfnr [Probability]; FNRa*mfnr -> FNRa + mfnr [Probability]; //deactivation FNR FNRa + o2 -> FNRi + FNRi [Probability]; //degradation FNR FNRi + ClpXP -> ClpXP [Probability]; FNRa + proteinase1 -> proteinase1 [Probability]; //green reporter protein production FNRa + FNRa -> FNRa_binded [Probability]; FNRa_binded -> FNRa + FNRa [Probability]; FNRa_binded + green_proteingreen_protein_gene -> FNRa_binded_green_proteingreen_protein_gene [Probability]; FNRa_binded_green_protein_gene -> FNRa_binded + green_protein_gene[Probability]; FNRa_binded_green_protein_gene -> green_protein + FNRa_binded_green_protein[Probability]; //red protein repression with 4 FNR activated FNRa_binded + red_protein_gene -> FNRa_binded_red_protein_gene [Probability]; FNRa_binded_red_protein_gene + FNRa_binded_red_protein_gene -> repression_red_protein [Probability]; repression_red_protein -> FNRa_binded_red_protein_gene + FNRa_binded_red_protein_gene [Probability]; FNRa_binded_red_protein_gene -> FNRa_binded + red_protein_gene[Probability]; //production of red protein when aerobic red_protein_gene + red_protein_gene -> red_protein_gene_binded[Probability]; red_protein_gene_binded -> red_protein_gene_binded + red_protein [Probability]; GPR_binded -> red_protein_gene + red_protein_gene[Probability]; //degradation of protein red_protein + proteinase2 -> proteinase2 [Probability]; green_protein + proteinase3 -> proteinase3 [Probability];