Team:DTU-Denmark/Notebook/1 August 2013

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(Difference between revisions)
(Procedure)
(PCR)
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Set up PCR to amplify AMO as fragment for USER cloning. Run triplicates on 50C and 3:00 and dublicates on a ramp program 56C -> 50C with 0.1C/s and 3:00
Set up PCR to amplify AMO as fragment for USER cloning. Run triplicates on 50C and 3:00 and dublicates on a ramp program 56C -> 50C with 0.1C/s and 3:00
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===USER reaction with HAO and pZA21 (native)===
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Procedure as protocolled.
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Per reaction:
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 +
USER enzyme - 1 uL
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NEB buffer 4 - 0.5 uL
 +
10x BSA - 0.5 uL
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backbone - 1 uL
 +
fragment - 7 uL
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Made doubles and negative. One reaction is incubated with top10 competent cells, the other with our competent cells.
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===LB+Kan plates===
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Made agar plates from LB medium and added Kanamycin to final concentration of 30 ug/ml.
==Results==
==Results==

Revision as of 16:38, 1 August 2013

1 August 2013

Contents

lab ...


Main purpose


Who was in the lab


Procedure


gel purification

Gel purified HAO fragment for USER cloning and pZA21 with endings for cloning with the 2-part Nir. Used QIAEX kit (without columns).

PCR

Set up PCR to amplify AMO as fragment for USER cloning. Run triplicates on 50C and 3:00 and dublicates on a ramp program 56C -> 50C with 0.1C/s and 3:00

USER reaction with HAO and pZA21 (native)

Procedure as protocolled.

Per reaction:

USER enzyme - 1 uL NEB buffer 4 - 0.5 uL 10x BSA - 0.5 uL backbone - 1 uL fragment - 7 uL

Made doubles and negative. One reaction is incubated with top10 competent cells, the other with our competent cells.

LB+Kan plates

Made agar plates from LB medium and added Kanamycin to final concentration of 30 ug/ml.

Results


Gels

1% gel for PCR of cytochromes with His-tag

  • neg
  • cycAX with His-tag at 45C
  • cycAX with His-tag at 45C
  • cycAX with His-tag at 50C
  • cycAX with His-tag at 50C
  • 1 kb ladder

2013-08-01 cyc his.jpg

1% gel for PCR products of Nir

  • 1 kb ladder
  • Nir part 2
  • Nir part 2
  • Nir part 1
  • Nir part 1
  • neg

2013-08-01 nir.jpg

Conclusion


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