Team:DTU-Denmark/Timeline

From 2013.igem.org

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* Made biobricks for AMO and cytochromes (are going to sequence these), the others are pending.
* Made biobricks for AMO and cytochromes (are going to sequence these), the others are pending.
* Completed biolector experiments for the [[Team:DTU-Denmark/pBAD_SPL|pBAD synthetic promoter library]].  We have constructed promoters that when induced, show higher activity than the constitutive promoter, and when not induced show very low activity.
* Completed biolector experiments for the [[Team:DTU-Denmark/pBAD_SPL|pBAD synthetic promoter library]].  We have constructed promoters that when induced, show higher activity than the constitutive promoter, and when not induced show very low activity.
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* Began constructing a page to describe the [http://parts.igem.org/PBAD_SPL pBAD SPL in the parts registry]
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* Began constructing a page to describe the [http://parts.igem.org/PBAD_SPL pBAD SPL in the parts registry].
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* Began modelling the [[Team:DTU-Denmark/Reactor_Model|design of a reactor using a continuous stirred tank reactor]]
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* Began modelling the [[Team:DTU-Denmark/Reactor_Model|design of a reactor using a continuous stirred tank reactor]].
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* Began researching physical reactor design
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* Began researching physical reactor design.
'''Week 37'''
'''Week 37'''
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* Verified biobricks with colony pcr using the sequencing primers
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* Verified biobricks with colony pcr using the sequencing primers.
* Human Practices: [[Team:DTU-Denmark/IP_and_Synthetic_Biology| Attended BioPeople event "The Basics and the Best" on IP and patent law]] to discuss the impact of the US Supreme Court ruling on Myriad Genetics on synthetic biology.
* Human Practices: [[Team:DTU-Denmark/IP_and_Synthetic_Biology| Attended BioPeople event "The Basics and the Best" on IP and patent law]] to discuss the impact of the US Supreme Court ruling on Myriad Genetics on synthetic biology.
'''Week 38'''
'''Week 38'''
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* Filmed "Bricks of Knowledge" [https://www.youtube.com/watch?v=7EiVttJpXH4 video on USER cloning] for KU team
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* Filmed "Bricks of Knowledge" [https://www.youtube.com/watch?v=7EiVttJpXH4 video on USER cloning] for KU team.
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* Mailed Biobricks! (tat signal peptide, AMO, cytochromes)
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* Mailed Biobricks! (tat signal peptide, AMO, cytochromes).
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* Conducted [[Team:DTU-Denmark/Bioreactor|Bioreactor experiment]]
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* Conducted [[Team:DTU-Denmark/Bioreactor|Bioreactor experiment]].
'''Week 39'''
'''Week 39'''
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* Held hackathon to complete wiki
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* Held hackathon to complete wiki.
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* Conducted [[Team:DTU-Denmark/Experiment2|experiment to characterize Nir transformant]]
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* Conducted [[Team:DTU-Denmark/Experiment2|experiment to characterize Nir transformant]].
===October===
===October===

Revision as of 17:47, 4 October 2013

Timeline

Contents

Project Timeline

January

February

  • 2013-02-25 Project selected: Conversion of ammonia to nitrous oxide in E. coli

March

  • 2013-03-11 Biobrick workshop hosted for KU and SDU
  • 2013-03-13 Project kickoff meeting with supervisors

April

May

June

  • 2013-06-04 Team competency mapping
  • 2013-06-09 Work on wiki started
  • 2013-06-29 Team BBQ

July

Week 27

  • Hello World project complete and successful. From a cytoplasmic extraction, we have observed GFP in the periplasm and RFP in the cytoplasm.
  • Conducted the toxicity experiment and completed data analysis: average ammonia concentrations in wastewater are not toxic to E. coli.

Week 28

  • Designed, ordered and received primers to extract genes from Nitrosomonas and Pseudomonas
  • Began work on cloning genes out of Nitrosomonas europaea and Pseudomonas aeruginosa. All isolations successful so far except for Nir.
  • Held the first hackaton to work on the wiki

Week 29

Week 30

  • Ordered new primers to extract Nir gene in two pieces.
    Dtu-Mutant2.png
  • Despite successful PCR and transformation of AMO, HAO and cytochromes, we only have viable colonies for the cytochromes. Expect that this is due to the fact that we are expressing periplasmic and membrane proteins, which is causing excessive stress on the cells.
  • Began work on pBAD synthetic promoter library so that we will be able to induce a low level of expression of our periplasmic genes.

Week 31

  • The week no PCR worked -- ran 96 PCRs with varying conditions to debug what is not working
  • Saturday BBQ with KU

August

Week 32

Week 33

Week 34

Week 35

  • Attended Scandinavian meetup in Odense hosted by SDU team. Thank you SDU for a great weekend!
  • Conducted another set of biolector experiments to characterize more colonies from the pBAD synthetic promoter library.
  • Sent pBAD SPL samples for sequencing.
  • Conducted experiment to characterize AMO and HAO transformants. Found that the AMO transformant is using ammonia faster than a nontransformed E. coli control!
    Dtu-Mutant1.png
    .
  • Decided on project title: Reqiuem for a Stream.
  • Wrote the project abstract.
  • Reviewed presentation with Julie, who gave us very good advice on pitching our project.
  • Completed safety form.

September

Week 36

Week 37

Week 38

Week 39

October

Week 40

  • Safety forms were approved on September 29, 2013 by the iGEM Safety Committee.
  • Completed wiki