"
Team:DTU-Denmark/model mutant2
From 2013.igem.org
(Difference between revisions)
(Created page with "{{:Team:DTU-Denmark/Templates/StartPage|}} ==Model of Mutant 2== <pre> code </pre> {{:Team:DTU-Denmark/Templates/EndPage}}") |
(→Model of Mutant 2) |
||
| Line 4: | Line 4: | ||
<pre> | <pre> | ||
| - | + | ********** MODEL | |
| + | Mutant 2 Kinetic model NO2->NO->N2O | ||
| + | ********** MODEL STATES | ||
| + | d/dt(NO) = R2-R3 | ||
| + | d/dt(N2O) = R3 | ||
| + | |||
| + | NO(0) = 0 | ||
| + | N2O(0) = 0 | ||
| + | |||
| + | ********** MODEL PARAMETERS | ||
| + | NO20 = 5.872 % [mM]correspondes to 100 mg/l | ||
| + | |||
| + | kcat_2 = 480 %[1/min] | ||
| + | km_2 = 0.053 %[mM] | ||
| + | |||
| + | kcat_3 = 16800 %[1/min] | ||
| + | km_3 = 0.0056 %[mM] | ||
| + | |||
| + | E =1.0575e-3 % 500 enzymes per cell | ||
| + | |||
| + | |||
| + | ********** MODEL VARIABLES | ||
| + | NO2 = NO20 - NO -N2O | ||
| + | |||
| + | ********** MODEL REACTIONS | ||
| + | R2 = (kcat_2*E*NO2)/(km_2+NO2) | ||
| + | R3 = (kcat_3*E*NO)/(km_3+NO) | ||
| + | |||
| + | ********** MODEL FUNCTIONS | ||
| + | |||
| + | |||
| + | ********** MODEL EVENTS | ||
| + | |||
| + | |||
| + | ********** MODEL MATLAB FUNCTIONS | ||
| + | |||
| + | |||
</pre> | </pre> | ||
{{:Team:DTU-Denmark/Templates/EndPage}} | {{:Team:DTU-Denmark/Templates/EndPage}} | ||
Latest revision as of 18:30, 4 October 2013
Model of Mutant 2
********** MODEL Mutant 2 Kinetic model NO2->NO->N2O ********** MODEL STATES d/dt(NO) = R2-R3 d/dt(N2O) = R3 NO(0) = 0 N2O(0) = 0 ********** MODEL PARAMETERS NO20 = 5.872 % [mM]correspondes to 100 mg/l kcat_2 = 480 %[1/min] km_2 = 0.053 %[mM] kcat_3 = 16800 %[1/min] km_3 = 0.0056 %[mM] E =1.0575e-3 % 500 enzymes per cell ********** MODEL VARIABLES NO2 = NO20 - NO -N2O ********** MODEL REACTIONS R2 = (kcat_2*E*NO2)/(km_2+NO2) R3 = (kcat_3*E*NO)/(km_3+NO) ********** MODEL FUNCTIONS ********** MODEL EVENTS ********** MODEL MATLAB FUNCTIONS
