Team:Edinburgh/Project/Results/Aggregation Results

Aggregation – metal induced biofilm formation in ‘’B. subtilis’’ As most used laboratory strain of ‘’Bacillus subtilis’’ the 168 is not able to form biofilms we have obtained a sample of native ‘’B. subtilis’’ capable to do that. Figure 1. presents the difference in on-plate appearance of the two starins.

Figure 1. Native strain of ‘’B. subtilis’’ (left) formed a biofilm layer (top of the left plate) whereas ‘’B. subtilis’’ 168 (right) is not capable to do that.

The first task to obtain a control over the biofilm formation pathway was to clone SinR transcription factor – a master regulator of that process. This was performed (Figure 2) and the gene was deposited in the Registry of Standard Biological Parts as BBa_K1122000.

Figure 2. SinR PCR product of an expected size - 333bp In order to perform deletion of native SinI and SinR in ‘’B. subtilis’’ genome their flanking regions were amplified from gDNA (Figure 3) and used for GenBrick assembly together with metal repressible SinR.

File:AggregationResults3.png Figure 3. SinR flanking region has a PCR product of an expected size.