Team:Groningen/Modeling/Heatmotility

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<h1>Heat Motility</h1>
<h1>Heat Motility</h1>
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The goal for our heat motility system(link!) is to obtain a higher concentration of silk in close proximity to the implant, which is achieved by immobilizing the silk producing bacteria once they are within some distance to the impant. The biological systems enabling this are the standard chemotaxis system and the DesK membrane fluidity sensor system. These systems have been modified and coupled to oneanother in order to stop ''B. Subtilis'' from moving when it is 37°C, and to make it swim when it is 25°C. In our model we simulate the behaviour of these systems and, if necessary, implement biologically plausible modifications to make it feasible.  
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The goal for our heat motility system is to obtain a higher concentration of silk in close proximity to the implant, which is achieved by immobilizing the silk producing bacteria once they are within some distance to the impant. The biological systems enabling this are the standard chemotaxis system and the DesK membrane fluidity sensor system (Link!). These systems have been modified and coupled to oneanother in order to stop ''B. Subtilis'' from moving when it is 37°C, and to make it swim when it is 25°C. In our model we simulate the behaviour of these systems and, if necessary, implement biologically plausible modifications to make it feasible.  

Revision as of 11:18, 29 September 2013

Contents

Heat Motility

The goal for our heat motility system is to obtain a higher concentration of silk in close proximity to the implant, which is achieved by immobilizing the silk producing bacteria once they are within some distance to the impant. The biological systems enabling this are the standard chemotaxis system and the DesK membrane fluidity sensor system (Link!). These systems have been modified and coupled to oneanother in order to stop B. Subtilis from moving when it is 37°C, and to make it swim when it is 25°C. In our model we simulate the behaviour of these systems and, if necessary, implement biologically plausible modifications to make it feasible.


The chemotaxis system of B. subtilis


The CheV subsystem


The methylation subsystem


The CheC CheD subsystem


Exact adaption


Motility model


Homogenous and non-homogenous environments


CheC knockout


The effects of temperature


The DesK system


Demonstration

<iframe src="http://player.vimeo.com/video/75658156?title=0&byline=0&portrait=0&badge=0&color=a93434&autoplay=1" width="300" height="225" frameborder="0"></iframe>

<iframe src="http://player.vimeo.com/video/75658155?title=0&byline=0&portrait=0&badge=0&color=a93434&autoplay=1" width="300" height="225" frameborder="0"></iframe>

<iframe src="http://player.vimeo.com/video/75658154?title=0&byline=0&portrait=0&badge=0&color=a93434&autoplay=1" width="300" height="225" frameborder="0"></iframe>

<iframe src="http://player.vimeo.com/video/75665911?title=0&byline=0&portrait=0&badge=0&color=a93434&autoplay=1" width="300" height="225" frameborder="0"></iframe>

<iframe src="http://player.vimeo.com/video/75665912?title=0&byline=0&portrait=0&badge=0&color=a93434&autoplay=1" width="300" height="225" frameborder="0"></iframe>

<iframe src="http://player.vimeo.com/video/75665913?title=0&byline=0&portrait=0&badge=0&color=a93434&autoplay=1" width="300" height="225" frameborder="0"></iframe>



Matlab code