Team:Groningen/protocols/biofilm media

From 2013.igem.org

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<div class="mainContent">
<div class="mainContent">
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Make an overnight culture of the strains of interest in LB broth.
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<br>Grow the strains overnight at 37°C on LB broth.  
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<br>1 ml of the O/N culture is required for every 10 ml of Sgg medium (2x SG supplemented with 1% [wt/vol] glycerol).
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<br>Use 1 ml of liquid culture for every 10 ml 2x Sgg medium to inoculate every 10 ml 2x Sgg.
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<br>This will be incubated at 27&deg;C for 5 days.
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<br>Iincubated at 27&deg;C for 5 days.
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<br> Sgg is 2x SG supplemented with 1% [wt/vol] glycerol.
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<br></br>
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<br></br>
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<h5>Media for macrocolony formation</h5>
<h5>Media for macrocolony formation</h5>
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<H5 id="special">2x SG Medium (100 ml)</H5>
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<br><H5>2x SG medium (100 mL)</H5>
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<table id="normal" width="70%">
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<table id="normal">
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   <tr>
   <tr>
     <th>compound</th>
     <th>compound</th>
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   <tr>
   <tr>
     <td>Nutrient broth (Difco)</td>
     <td>Nutrient broth (Difco)</td>
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     <td ALIGN=CENTER>1.6 g</td>
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     <td>1.6 g</td>
     <td></td>
     <td></td>
   </tr>
   </tr>
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   <tr>
   <tr>
     <td>KCl</td>
     <td>KCl</td>
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     <td ALIGN=CENTER>0.2 g</td>
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     <td>0.2 g</td>
     <td></td>
     <td></td>
   </tr>
   </tr>
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   <tr>
   <tr>
     <td>MgSO<sub>4</sub>.7H<sub>2</sub>O </td>
     <td>MgSO<sub>4</sub>.7H<sub>2</sub>O </td>
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     <td ALIGN=CENTER>0.05 g</td>
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     <td>0.05 g</td>
     <td></td>
     <td></td>
   </tr>
   </tr>
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   <tr>
   <tr>
     <td>agar</td>
     <td>agar</td>
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     <td ALIGN=CENTER>1.5 g</td>
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     <td>1.5 g</td>
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     <td> </td>
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     <td></td>
   </tr>
   </tr>
<tr>
<tr>
     <td></td>
     <td></td>
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     <td ALIGN=CENTER></td>
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     <td></td>
     <td> add everything together and autoclave</td>
     <td> add everything together and autoclave</td>
   </tr>
   </tr>
<tr>
<tr>
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     <td>Ca(NO<sub>3</sub>)<sub>2</sub>.4H<sub>2</sub>O  1 mM</td>
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     <td>Ca(NO<sub>3</sub>)<sub>2</sub>.4H<sub>2</sub>O  (1 mM)</td>
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     <td ALIGN=CENTER>0.1 mL</td>
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     <td>0.1 ml</td>
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     <td> </td>
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     <td></td>
   </tr>
   </tr>
<tr>
<tr>
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     <td>MnCl<sub>2</sub>.4H<sub>2</sub>O 0.1 mM</td>
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     <td>MnCl<sub>2</sub>.4H<sub>2</sub>O (0.1 mM)</td>
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     <td ALIGN=CENTER>0.1 mL</td>
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     <td>0.1 ml</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
<tr>
<tr>
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     <td>FeSO<sub>4</sub>  1 &micro;M</td>
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     <td>FeSO<sub>4</sub>  (1 &micro;M)</td>
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     <td ALIGN=CENTER>0.1 mL</td>
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     <td>0.1 ml</td>
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     <td> </td>
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     <td></td>
   </tr>
   </tr>
<tr>
<tr>
     <td>0.1% glucose </td>
     <td>0.1% glucose </td>
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     <td ALIGN=CENTER>0.5 mL</td>
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     <td>0.5 ml</td>
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     <td> </td>
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     <td></td>
   </tr>
   </tr>
</table>  
</table>  
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<br><H5>LB/Mn/glucose medium (100 mL)</H5>
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<br><H5 id="special">LB/Mn/Glucose Medium (100 ml)</H5>
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<table id="normal">
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<table id="normal" width="70%">
   <tr>
   <tr>
     <th>compound</th>
     <th>compound</th>
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   <tr>
   <tr>
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     <td>LB/ 1.5% agar</td>
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     <td>LB 1.5% agar</td>
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     <td ALIGN=CENTER>100 ml</td>
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     <td>100 ml</td>
     <td>autoclave</td>
     <td>autoclave</td>
   </tr>
   </tr>
<tr>
<tr>
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     <td>MnCl<sub>2</sub>.4H<sub>2</sub>O  0.1 mM</td>
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     <td>MnCl<sub>2</sub>.4H<sub>2</sub>O  (0.1 mM)</td>
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     <td ALIGN=CENTER>0.1mL</td>
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     <td>0.1 ml</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
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<tr>
<tr>
     <td>0.1% glucose </td>
     <td>0.1% glucose </td>
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     <td ALIGN=CENTER>0.5 mL</td>
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     <td>0.5 ml</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
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<br><H5> MSgg medium (100 mL)</H5>
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<br><H5 id="special"> MSgg Medium (100 ml)</H5>
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<table id="normal">
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<table id="normal" width="70%">
   <tr>
   <tr>
     <th>compound</th>
     <th>compound</th>
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   <tr>
   <tr>
     <td>KH<sub>2</sub>PO<sub>4</sub></td>
     <td>KH<sub>2</sub>PO<sub>4</sub></td>
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     <td ALIGN=CENTER>0.026 g</td>
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     <td>0.026 g</td>
     <td></td>
     <td></td>
   </tr>
   </tr>
<tr>
<tr>
     <td>K<sub>2</sub>HPO<sub>4</sub></td>
     <td>K<sub>2</sub>HPO<sub>4</sub></td>
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     <td ALIGN=CENTER>0.061 g</td>
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     <td>0.061 g</td>
     <td></td>
     <td></td>
   </tr>
   </tr>
   <tr>
   <tr>
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     <td>MOPS 100 mM</td>
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     <td>MOPS (100 mM)</td>
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     <td ALIGN=CENTER>2.09 g</td>
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     <td>2.09 g</td>
     <td></td>
     <td></td>
   </tr>
   </tr>
   <tr>
   <tr>
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     <td>MgCl<sub>2</sub>.6H<sub>2</sub>O  2 mM</td>
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     <td>MgCl<sub>2</sub>.6H<sub>2</sub>O  (2 mM)</td>
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     <td ALIGN=CENTER>0.04 g</td>
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     <td>0.04 g</td>
     <td></td>
     <td></td>
   </tr>
   </tr>
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   <tr>
   <tr>
     <td>agar</td>
     <td>agar</td>
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     <td ALIGN=CENTER>1.5 g</td>
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     <td>1.5 g</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
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<tr>
<tr>
     <td></td>
     <td></td>
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     <td ALIGN=CENTER></td>
+
     <td></td>
     <td>add everything together and autoclave</td>
     <td>add everything together and autoclave</td>
   </tr>
   </tr>
<tr>
<tr>
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     <td>CaCl<sub>2</sub>  700 mM</td>
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     <td>CaCl<sub>2</sub>  (700 mM)</td>
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     <td ALIGN=CENTER>0.1 mL</td>
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     <td>0.1 ml</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
<tr>
<tr>
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     <td>MnCl<sub>2</sub> 50 &micro;M</td>
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     <td>MnCl<sub>2</sub> (50 &micro;M)</td>
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     <td ALIGN=CENTER>50 &micro;L</td>
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     <td>50 &micro;l</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
<tr>
<tr>
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     <td>FeCl<sub>3</sub>  50 &micro;M</td>
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     <td>FeCl<sub>3</sub>  (50 &micro;M)</td>
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     <td ALIGN=CENTER>0.1 mL</td>
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     <td>0.1 ml</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
<tr>
<tr>
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     <td>ZnCl<sub>2</sub> 1 &micro;M</td>
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     <td>ZnCl<sub>2</sub> (1 &micro;M)</td>
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     <td ALIGN=CENTER>0.1 mL</td>
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     <td>0.1 ml</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
<tr>
<tr>
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     <td>thiamine 2 &micro;M</td>
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     <td>thiamine (2 &micro;M)</td>
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     <td ALIGN=CENTER>0.1 mL</td>
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     <td>0.1 ml</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
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<tr>
<tr>
     <td>0.5% glycerol </td>
     <td>0.5% glycerol </td>
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     <td ALIGN=CENTER>0.57 mL</td>
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     <td>0.57 ml</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
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<tr>
<tr>
     <td>0.5% glutamate </td>
     <td>0.5% glutamate </td>
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     <td ALIGN=CENTER>10 mL</td>
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     <td>10 ml</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>
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<tr>
<tr>
     <td>tryptophan </td>
     <td>tryptophan </td>
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     <td ALIGN=CENTER>1 mL</td>
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     <td>1 ml</td>
     <td> </td>
     <td> </td>
   </tr>
   </tr>

Latest revision as of 00:27, 5 October 2013

Make an overnight culture of the strains of interest in LB broth.
1 ml of the O/N culture is required for every 10 ml of Sgg medium (2x SG supplemented with 1% [wt/vol] glycerol).
This will be incubated at 27°C for 5 days.
Media for macrocolony formation
2x SG Medium (100 ml)
compound amount treatment
Nutrient broth (Difco) 1.6 g
KCl 0.2 g
MgSO4.7H2O 0.05 g
agar 1.5 g
add everything together and autoclave
Ca(NO3)2.4H2O (1 mM) 0.1 ml
MnCl2.4H2O (0.1 mM) 0.1 ml
FeSO4 (1 µM) 0.1 ml
0.1% glucose 0.5 ml

LB/Mn/Glucose Medium (100 ml)
compound amount treatment
LB 1.5% agar 100 ml autoclave
MnCl2.4H2O (0.1 mM) 0.1 ml
0.1% glucose 0.5 ml

MSgg Medium (100 ml)
compound amount treatment
KH2PO4 0.026 g
K2HPO4 0.061 g
MOPS (100 mM) 2.09 g
MgCl2.6H2O (2 mM) 0.04 g
agar 1.5 g
add everything together and autoclave
CaCl2 (700 mM) 0.1 ml
MnCl2 (50 µM) 50 µl
FeCl3 (50 µM) 0.1 ml
ZnCl2 (1 µM) 0.1 ml
thiamine (2 µM) 0.1 ml
0.5% glycerol 0.57 ml
0.5% glutamate 10 ml
tryptophan 1 ml