Team:Heidelberg/Team:Heidelberg/Tyrocidine week12 ov

From 2013.igem.org

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(Created page with " ==Primer ordered for Module Shuffling Experiments== {|class="wikitable" |- ! Identifier !! Order date !! Note !! Sequence |- | IK09:TycA_A1_fw || 2013-07-08 || Colony-PCR of '...")
(Primer ordered for Module Shuffling Experiments)
 
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==Primer ordered for Module Shuffling Experiments==
 
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{|class="wikitable"
 
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! Identifier !! Order date !! Note !! Sequence
 
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| IK09:TycA_A1_fw || 2013-07-08 || Colony-PCR of ''Brevibacillus parabrevis'': TycA A domain || ATGTTAGCAAATCAAGCCAATCTC
 
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| IK10:TycA_A1_rev || 2013-07-08 || Colony-PCR of ''Brevibacillus parabrevis'': TycA A domain || TTGGTTTGCTGTAAGATCAGGCTC
 
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| IK11:TycB_A1_fw || 2013-07-08 || Colony-PCR of ''Brevibacillus parabrevis'': TycB A1 domain || AATTCGGGAGTCGAGCTTTGTCAG
 
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| IK12:TycC6_rev || 2013-07-19 || reverse primer for tyrocidine TycC6 module || TTATTTCAGGATGAACAGTTCTTGCAGG
 
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| IK13:IK13:TycB1-dCom-dC_fw || 2013-07-19 || forward primer for tyrocidine TycB1 module without Com and C domain || GATTGCGTGGCAAACAATTCGGGAGTC
 
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| IK14:TycB1-TycC6_rev || 2013-07-19 || reverse primer for tyrocidine TycB1 module with Gibson overhang for TycC6 || CAGGCTCGATCGAGAAGACATTCCC TTCCTCCCCGCCTTCCACATACGC
 
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| IK15:TycC6-TycB1_fw || 2013-07-19 || forward primer for tyrocidine TycC6 module with Gibson overhang for TycB1 || GCGTATGTGGAAGGAGGGGAGGAA GGGAATGTCTTCTCGATCGAGCCTG
 
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| IK16:TycA_fw || 2013-07-19 || forward primer for tyrocidine TycA module || ATGTTAGCAAATCAGGCCAATCTCATC
 
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| IK17:TycA-dCom-TycC5_rev || 2013-07-19 || reverse primer for tyrocidine TycA module without Com domain with Gibson overhang for TycC5 || GAATGCGCTCTCGGCAATATGGGC TGTTCGCTCTACTTCTTTTTTCTCGG
 
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| IK18:TycC5-TycA-dCom_fw || 2013-07-19 || forward primer for tyrocidine TycC5 module with Gibson overhang for TycAdCom || CCGAGAAAAAAGAAGTAGAGCGAACA GCCCATATTGCCGAGAGCGCATTC
 
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| IK19:TycB1-TycC5_rev || 2013-07-19 || reverse primer for tyrocidine TycB1 module with Gibson overhang for TycC5 || GAATGCGCTCTCGGCAATATGGGC TTCCTCCCCGCCTTCCACATACGC
 
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| IK20:TycC5-TycB1_fw || 2013-07-19 || forward primer for tyrocidine TycC5 module with Gibson overhang for TycB1 || GCGTATGTGGAAGGAGGGGAGGAA GCCCATATTGCCGAGAGCGCATTC
 
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| IK21:pSB4K5-TycB1dComdC_rev || 2013-07-19 || reverse primer for mRFP-carrying backbones with Gibson overhang for tyrocidine TycA module (nomenclature wrong) || GTCGATGAGATTGGCCTGATTTGCTAACAT CTAGTATTTCTCCTCTTTCTCTAGTATGTG
 
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| IK22::pSB4K5-TycC6_fw || 2013-07-19 || forward primer for mRFP-carrying backbones with Gibson overhang for tyrocidine TycC6 module || AACATCCTGCAAGAACTGTTCATCCTGAAA TAATAACGCTGATAGTGCTAGTGTAGATC
 
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| IK23:pSB4K5-TycA_rev || 2013-07-19 || reverse primer for mRFP-carrying backbones with Gibson overhang for tyrocidine TycB1 module without Com and C domains + start codon (nomenklature wrong) || GACTCCCGAATTGTTTGCCACGCAATCCAT CTAGTATTTCTCCTCTTTCTCTAGTATGTG
 
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| PW01:TycB_A1_rev || 2013-07-08 || Colony-PCR of ''Brevibacillus parabrevis'': TycB A1 domain || CTTGGCACTTCCTTCAGGCTTC
 
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| PW02:TycB_E1_fw || 2013-07-08 || Colony-PCR of ''Brevibacillus parabrevis'': TycB E domain || CGAGAGAGCGAGCAAGGTG
 
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| PW03:TycB_E1_rev || 2013-07-08 || Colony-PCR of ''Brevibacillus parabrevis'': TycB E domain || GTACTCGCCTTCTTCTTTTGC
 
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| PW04:pSB1C3-TycC5ΔC_rev || 2013-07-19 || Integration of Tetrapeptide NRPS from ''Brevibacillus parabrevis'' in backbone; Gibson primer for Tetrapeptide I & II || TGTTTTGGTTGCGAGGAAGCTGTGCAGCAT CTAGTATTTCTCCTCTTTCTCTAGTATGTG
 
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| PW05:TycC5ΔC_fwd || 2013-07-19 || Amplification of TycC5-Module from ''Brevibacillus parabrevis''; Gibson primer for Tetrapeptide I & II || ATGCTGCACAGCTTCCTCGCAACCAAAACAGCC
 
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| PW06:TycC5ΔC-TycB1ΔCom_rev || 2013-07-19 || Amplification of TycC5-Module from ''Brevibacillus parabrevis''; Gibson primer for Tetrapeptide I & II || GTGAAACAGCATCCCCTCTTGCATCGG AGGCTCGATCGAGAAGACATTCCCTTTG
 
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| PW07:TycC5ΔC-TycB1ΔCom_fwd || 2013-07-19 || Amplification of TycB1+C(TycB2)-Module from ''Brevibacillus parabrevis''; Gibson primer for Tetrapeptide I & II || CAAAGGGAATGTCTTCTCGATCGAGCCT CCGATGCAAGAGGGGATGCTGTTTCAC
 
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| PW08:C(TycB2)-TycAΔCom_rev || 2013-07-19 || Amplification of TycB1+C(TycB2)-Module from ''Brevibacillus parabrevis''; Gibson primer for Tetrapeptide I & II || GTTGTCGATGAGATTGGCCTGATTTGCTAACAT GATTTGCGCCAGCTCCTGCTCCGTGTT
 
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| PW09:C(TycB2)-TycAΔCom_fwd || 2013-07-19 || Amplification of TycA-Module from ''Brevibacillus parabrevis''; Gibson primer for Tetrapeptide I & II || AACACGGAGCAGGAGCTGGCGCAAATC ATGTTAGCAAATCAGGCCAATCTCATCGACAAC
 
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| PW10:TycAΔCom-TycC6_rev || 2013-07-19 || Amplification of TycAΔCom-Module from ''Brevibacillus parabrevis''; Gibson primer for Tetrapeptide I || CTTTGGCTGTCTCTTCGATGAACGC TCGCTCTACTTCTTTTTTCTCGGTGCAATG
 
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| PW11:TycAΔCom-TycC6_fwd || 2013-07-19 || Amplification of TycC6-Module from ''Brevibacillus parabrevis''; Gibson primer for Tetrapeptide I || CATTGCACCGAGAAAAAAGAAGTAGAGCGA GCGTTCATCGAAGAGACAGCCAAAG
 
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| PW12:TycAΔE-TycC6_rev || 2013-07-19 || Amplification of TycAΔE-Module from ''Brevibacillus parabrevis''; Gibson primer for Tetrapeptide II; one mismatch C->t || CTTTTGCACAGGCTCGATCGAGAAGAC GCTtTTGACAAAAAGAGCAACCTG
 
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| PW13:TycAΔE-TycC6_fwd || 2013-07-19 || Amplification of TycC6-Module from ''Brevibacillus parabrevis''; Gibson primer for Tetrapeptide II; one mismatch G->a || CAGGTTGCTCTTTTTGTCAAaAGC GTCTTCTCGATCGAGCCTGTGCAAAAG
 
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Latest revision as of 16:58, 4 October 2013