Team:HokkaidoU Japan/Promoter/Methods

From 2013.igem.org

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<h2>Assay</h2>
<h2>Assay</h2>
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To measure transcription activities, we prepared two popular reporter genes and one antibiotics resistance gene, mRFP1, lacZ&alpha ;, and Kanamycin resistance gene.
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To measure transcription activities, we prepared two popular reporter genes and one antibiotics resistance gene, mRFP1, lacZ&alpha;, and Kanamycin resistance gene.
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Revision as of 02:06, 28 September 2013

Maestro E.coli

Promoter

Method

Promoter family

Fig. 1

As our first step for constructing original promoter family, we synthesized theoretically ideal consensus sequence to bind σ factor. This should ensure that promoter will form the most stable complex with σ factor. We synthesized such a consensus promoter showed in the figure above, originated from consensus sequence and lac operon promoter (pLac) [Fig. 1].

Fig.2

We constructed consensus promoter by primer annealing. [Fig. 2]. For mutating hexamer at -35 region, a promoter randomize primer which has random hexamer (NNNNNN) at -35 region was used, but other sequence in the primer is same with consensus promoter [Fig.3]. We designed reverse promoter, promoter isolation primer, that is to isolate randomized promoter by annealing downstream of it [Fig.4].

Fig.3
Fig.4

Assay

To measure transcription activities, we prepared two popular reporter genes and one antibiotics resistance gene, mRFP1, lacZα, and Kanamycin resistance gene.