Team:KAIST Korea

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font-style: italic;
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font-family: 'Source Sans Pro', sans-serif;
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<link rel="stylesheet" type="text/css" media="print" href="/wiki/skins/common/commonPrint.css?270" />
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Line 36: Line 655:
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Line 46: Line 665:
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Line 78: Line 697:
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background: linear-gradient(top, #4c4e5a 0%,#2c2d33 100%);
 
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margin: 30px auto 0 auto;
 
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<link href='http://fonts.googleapis.com/css?family=Gloria+Hallelujah|Open+Sans:600italic,400,800' rel='stylesheet' type='text/css'>
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Line 128: Line 723:
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width:690px;
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font-family: 'Open Sans', sans-serif;
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padding: 0px 15px 0px 15px;
left:300px;
left:300px;
Line 136: Line 730:
z-index: 2;
z-index: 2;
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#kaistcontent #tab
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text-align:justify;
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}
+
background:#f2f3f3;
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padding:5px 30px 5px 30px;
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border:1px solid #f4f4f4;
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margin : 0 20px 0 20px;
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#kaistcontent #starter-grad
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height:100px;
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float:left;
margin:0px 15px 2px 0px;
margin:0px 15px 2px 0px;
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}
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font-family: 'Open Sans', sans-serif;
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color: #08185d;
color: #08185d;
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padding:0px 0px 0px 10px;
padding:0px 0px 0px 10px;
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#kaistcontent #sub-title
{
{
Line 169: Line 770:
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font-style:italic;
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#kaistcontent h1
{
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Line 178: Line 779:
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line-height:110%;
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#kaistcontent ul
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list-style-type:disc;
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#kaistcontent #little
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#kaistcontent #little2
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#kaistcontent #sub-sub-title
#kaistcontent #sub-sub-title
{
{
Line 199: Line 820:
line-height:110%;
line-height:110%;
}
}
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</style>
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<script type="text/javascript" src="http://ajax.googleapis.com/ajax/libs/jquery/1.4.3/jquery.min.js"></script>
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var $oe_menu = $('#oe_menu');
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var $oe_menu_items = $oe_menu.children('li');
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<script type="text/javascript">
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$(function() {
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var $oe_menu2 = $('#oe_menu2');
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height: 50px;
 
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weight: 100%;
 
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padding-left: 30%;
 
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<style>
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#kaist-footerbox
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{
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background: #4c4e5a;
+
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background: -webkit-linear-gradient(top, #4c4e5a 0%,#2c2d33 100%);
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margin:0 auto;
-
margin: 30px auto 0 auto;
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}
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+
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+
#kaist-footerbox img #footer-img
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position: relative;
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{
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margin: 0px auto 0 auto;
+
width: 1024px;
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float: left;
+
height:106px;
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display: block;
+
z-index:2;
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+
opacity:0.9;
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margin:0 auto;
}
}
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</style>
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</head>
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<body>
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<div id="main">
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/* Links */
 
-
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+
<a href="https://2013.igem.org/Team:KAIST_Korea"><img id="main-logo" src="https://static.igem.org/mediawiki/2013/5/59/Logopart_Kaist.png"/></a>
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<img id="main-img" src="https://static.igem.org/mediawiki/2012/6/61/Home_kaist_background.png"/>
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+
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<div class="oe_wrapper">
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+
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padding-right: 10px;
+
<li><a href="https://2012.igem.org/Team:KAIST_Korea/Home_Intro">HOME</a>
 +
<div style="top:30px;">
 +
<ul style="margin:0 0 0 30px;width:100px;">
 +
<li><a href="https://2012.igem.org/Team:KAIST_Korea/Home_Intro">Introduction</a></li>
 +
</ul>
 +
<ul style="width:100px;margin:0px 5px 0px 5px;">
 +
<li style="font-size:14px;"><a href="https://2012.igem.org/Team:KAIST_Korea/Home_iGEM">iGEM</a></li>
 +
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</li>
 +
<li><a href="https://2012.igem.org/Team:KAIST_Korea/Team_Members">TEAM</a>
 +
<div style="left:-85px;top:25px;"><!-- -112px -->
 +
<ul>
 +
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 +
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<ul style="padding:5px 0px 5px 0px">
 +
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 +
</ul>
 +
<ul style="padding:5px 0px 5px 0px">
 +
<li><a href="https://2012.igem.org/Team:KAIST_Korea/Team_Gallery">Gallery</a></li>
 +
</ul>
 +
</div>
 +
</li>
 +
<li><a href="https://2012.igem.org/Team:KAIST_Korea/Part_About">DATA</a>
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<div style="left:-182px;top:30px;">
 +
<ul style="margin:0 0 0 30px;width:100px;">
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<li><a href="https://2012.igem.org/Team:KAIST_Korea/Part_About">Description</a></li>
 +
</ul>
 +
<ul style="width:100px">
 +
<li><a href="https://2012.igem.org/Team:KAIST_Korea/Part_Bio">Bio Bricks</a></li>
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<div class="oe_wrapper2">
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-
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<div style="top:21px;left:32px;">
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+
<ul style="width:100px;height:19px;">
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-
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border-radius: 0 0 5px 5px;
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-
-webkit-transition: opacity .25s ease .1s;
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-moz-transition: opacity .25s ease .1s;
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-
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-
height: 0;
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<div style="left:-91px;top:30px;"><!-- -112px -->
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overflow: hidden;
+
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-
padding: 0px;
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-
.menu li:hover > ul li {
+
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-
padding: 0;
+
</ul>
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+
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-
.menu ul li a {
+
</ul>
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<ul style="width:100px;height:19px;">
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padding: 4px 0 4px 40px;
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-
margin: 0;
+
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-
border-bottom: 1px solid #353539;
+
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+
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+
</li>
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.menu ul li:last-child a { border: none; }
+
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<span id="little"><span id="starter">T</span>he widely used gene knock-out strategies are based upon a mere [on-off] control and more complex regulation is impossible. On the other hand, knock-down strategies are more versatile in usage but the current techniques are vastly laborious for systematic control and pose difficulty in multiple targeting because of the intricate design and scar accumulation.
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iGEM KAIST 2013 seeks to take the yet-to-be-perfected genetic regulation technology to a new level: The <span id="starter">RAPTOR</span> (RNA Associated Prokaryotic Transcript Optimization with CRISPR) technology. RAPTOR uses CRISPR type III system for gene regulation. CRISPR type III targets and cleaves specific mRNA sequences through complementary binding of crRNA and nuclease activity of Cmr protein complex. RAPTOR exploits this nature of CRISPR for systematically down regulating the mRNA level of specific genes.
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<h2>Introduce My team project RAPTOR.</h2>
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<p>The widely used gene knock-out strategies are based upon a mere [on-off] control and more complex regulation is impossible. On the other hand, knock-down strategies are more versatile in usage but the current techniques are vastly laborious for systematic control and pose difficulty in multiple targeting because of the intricate design and scar accumulation.
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iGEM KAIST 2013 seeks to take the yet-to-be-perfected genetic regulation technology to a new level: The RAPTOR (RNA Associated Prokaryotic Transcript Optimization with CRISPR) technology. RAPTOR uses CRISPR type III system for gene regulation. CRISPR type III targets and cleaves specific mRNA sequences through complementary binding of crRNA and nuclease activity of Cmr protein complex. RAPTOR exploits this nature of CRISPR for systematically down regulating the mRNA level of specific genes.
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Due to the characteristics of RAPTOR, one of the most useful applications of this technology can be biosynthesis pathway regulation. Programmed crRNA expression allows fine-tuning of target mRNA expression levels and can precisely regulate enzyme concentrations. Not only fine-tuning but multiplex engineering is also possible through simultaneous expression of different crRNAs. Thus, multiple enzymes can be targeted in pathway control.
Due to the characteristics of RAPTOR, one of the most useful applications of this technology can be biosynthesis pathway regulation. Programmed crRNA expression allows fine-tuning of target mRNA expression levels and can precisely regulate enzyme concentrations. Not only fine-tuning but multiplex engineering is also possible through simultaneous expression of different crRNAs. Thus, multiple enzymes can be targeted in pathway control.
As a proof of concept we sought to regulate the lycopene pathway that is incorporated into the genome of Escherichia coli. The efflux of lycopene precursors is optimally reduced through lowering the mRNA levels of enzymes that synthesize non-lycopene end products. Through observation of increased lycopene yield in the E.coli, potentiality of RAPTOR technology can be validated.
As a proof of concept we sought to regulate the lycopene pathway that is incorporated into the genome of Escherichia coli. The efflux of lycopene precursors is optimally reduced through lowering the mRNA levels of enzymes that synthesize non-lycopene end products. Through observation of increased lycopene yield in the E.coli, potentiality of RAPTOR technology can be validated.
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Latest revision as of 10:12, 23 August 2013

<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> Team:KAIST Korea/Project Background - 2013.igem.org


Project : Overview



The widely used gene knock-out strategies are based upon a mere [on-off] control and more complex regulation is impossible. On the other hand, knock-down strategies are more versatile in usage but the current techniques are vastly laborious for systematic control and pose difficulty in multiple targeting because of the intricate design and scar accumulation. iGEM KAIST 2013 seeks to take the yet-to-be-perfected genetic regulation technology to a new level: The RAPTOR (RNA Associated Prokaryotic Transcript Optimization with CRISPR) technology. RAPTOR uses CRISPR type III system for gene regulation. CRISPR type III targets and cleaves specific mRNA sequences through complementary binding of crRNA and nuclease activity of Cmr protein complex. RAPTOR exploits this nature of CRISPR for systematically down regulating the mRNA level of specific genes. Due to the characteristics of RAPTOR, one of the most useful applications of this technology can be biosynthesis pathway regulation. Programmed crRNA expression allows fine-tuning of target mRNA expression levels and can precisely regulate enzyme concentrations. Not only fine-tuning but multiplex engineering is also possible through simultaneous expression of different crRNAs. Thus, multiple enzymes can be targeted in pathway control. As a proof of concept we sought to regulate the lycopene pathway that is incorporated into the genome of Escherichia coli. The efflux of lycopene precursors is optimally reduced through lowering the mRNA levels of enzymes that synthesize non-lycopene end products. Through observation of increased lycopene yield in the E.coli, potentiality of RAPTOR technology can be validated.