Team:Michigan/Modeling

From 2013.igem.org

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Formulation:
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[[File:ExpressionModel1.png|218px|center]]
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Solution:
[[File:ExpressionModel2.png|343px|center]]
[[File:ExpressionModel2.png|343px|center]]
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Equilibration:
[[File:ExpressionModel3.png|128px|center]]
[[File:ExpressionModel3.png|128px|center]]
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Calibration:
[[File:ExpressionModel4.png|269px|center]]
[[File:ExpressionModel4.png|269px|center]]
[[File:ExpressionModel5.png|322px|center]]
[[File:ExpressionModel5.png|322px|center]]

Revision as of 01:52, 20 September 2013

Xayona Website Template

Overview Introduction Expression Model Switch Model Inducible Hbif Model Future Directions

Contents

Overview

Best model.jpg

Model of Recombinase Expression

Model of the Switch

Model of Inducible Hbif

Introduction

• switch modeling 

   • goals: produce both states of switch, use model to optimize switch

• mass action modeling 

   • what is mass action

• pros of mass action modeling, i.e. why we used it

• form of mass action models/solvability doc

• analytical modeling 

   • formulation

   • reduction

   • solution

   • equilibration

   • stabilization

   • calibration

   • optimization

File:Solvability.pdf

Expression Model

Expression.jpg
ExpressionModelFigure.png

Formulation:

ExpressionModel1.png

Solution:

ExpressionModel2.png

Equilibration:

ExpressionModel3.png

Calibration:

ExpressionModel4.png
ExpressionModel5.png

Switch Model

Switch.jpg
SwitchModelFigure.png
SwitchModel1.png
SwitchModel2.png
SwitchModel3.png
SwitchModel4-1.png
SwitchModel4-2.png
SwitchModel5-1.png
SwitchModel5-2.png

Inducible Hbif Model

InducedHbif.jpg
InducibleHbifModelFigure.png

System:

InducibleHbifModel1.png

Conservation Equation:

InducibleHbifModel2.png

Reduced System:

InducibleHbifModel3.png

Solution:

InducibleHbifModel4.png

Steady State:

InducibleHbifModel5.png

Calibration:

InducibleHbifModel6-1.png
InducibleHbifModel6-2.png

Future Directions

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