"
Team:Paris Saclay/Modeling/Simulator/hsimexemple
From 2013.igem.org
title = "FNR simulator"; //declare the molecules and metabolite molecule fnr_on, fnr_off, fnr_on_pair; molecule prom_fnr, prom_fnr_binded; molecule protein; metabolite o2; //declare the size of molecule size (fnr_on) = 0.1; size (fnr_on_pair) = 0.2; size (fnr_off) = 0.1; speed (fnr_on) = 0.1; speed (fnr_on_pair) = 0.05; speed (fnr_off) = 0.1; size (prom_fnr) = 2.0; speed (prom_fnr) = 0.05; size (prom_fnr_binded) = 2.0; speed (prom_fnr_binded) = 0.05; size (protein) = 0.2; speed (protein) = 0.1; //syntax of reaction rules fnr_on + o2 -> fnr_off + o2 [0.7];// probability for this rule take place is 0.7 fnr_off -> fnr_on [0.001]; fnr_on + fnr_on -> fnr_on_pair [0.5]; fnr_on_pair -> fnr_on + fnr_on [0.001]; prom_fnr + fnr_on_pair -> prom_fnr_binded [0.6]; prom_fnr_binded -> prom_fnr + fnr_on_pair [0.03]; prom_fnr_binded -> prom_fnr_binded + protein [0.01]; //Initial concentrations init (10000, fnr_on); init (3, prom_fnr); init (2, o2);
