"
Team:Paris Saclay/modeling/fnr0.xml
From 2013.igem.org
(Created page with "<?xml version="1.0" encoding="ISO-8859-1"?> <sim> <yscale>1300</yscale> <volume>0.7</volume> <!-- 0.7 micrometres cube --> <timestep>0.0001</timestep> <!-- seconde --> <alpha>...") |
|||
| Line 11: | Line 11: | ||
<!-- Molecule declaration curve_show="true" curve_color="#AAAA00" --> | <!-- Molecule declaration curve_show="true" curve_color="#AAAA00" --> | ||
| - | <molecule name="FNR" quantity=" | + | <molecule name="FNR" quantity="1000"/> |
<molecule name="O2" const="true" adjustable="true" quantity="5000"/> | <molecule name="O2" const="true" adjustable="true" quantity="5000"/> | ||
<molecule name="FNR_ox"/> | <molecule name="FNR_ox"/> | ||
| Line 67: | Line 67: | ||
<!-- Blue reporter protein production --> | <!-- Blue reporter protein production --> | ||
<reaction probability="0.05"> | <reaction probability="0.05"> | ||
| - | <in> | + | <in>Pfnr_represasor</in> |
<out>BP</out> | <out>BP</out> | ||
</reaction> | </reaction> | ||
</sim> | </sim> | ||
Revision as of 16:03, 8 September 2013
<?xml version="1.0" encoding="ISO-8859-1"?>
<sim>
<yscale>1300</yscale>
<volume>0.7</volume> <timestep>0.0001</timestep> <alpha>7.4e-7</alpha>
<molecule name="FNR" quantity="1000"/>
<molecule name="O2" const="true" adjustable="true" quantity="5000"/>
<molecule name="FNR_ox"/>
<molecule name="Pfnr_activator" quantity="1"/>
<molecule name="Pfnr_activator_bond"/>
<molecule name="GP" curve_show="true" curve_color="#00AA00"/>
<molecule name="Pfnr_repressor" quantity="1"/>
<molecule name="Pfnr_repressor_bond"/>
<molecule name="BP" curve_show="true" curve_color="#FF0000"/>
<reaction probability="0.05">
<in>FNR</in> <in>O2</in> <out>FNR_ox</out>
</reaction> <reaction probability="0.05">
<in>FNR_ox</in> <out>O2</out> <out>FNR</out>
</reaction>
<reaction probability="0.05">
<in>FNR</in> <in>Pfnr_activator</in> <out>Pfnr_activator_bond</out>
</reaction> <reaction probability="0.05">
<in>Pfnr_activator_bond</in> <out>Pfnr_activator</out> <out>FNR</out>
</reaction> <reaction probability="0.05">
<in>Pfnr_activator_bond</in> <out>GP</out>
</reaction>
<reaction probability="0.05">
<in>FNR</in> <in>Pfnr_repressor</in> <out>Pfnr_repressor_bond</out>
</reaction> <reaction probability="0.05">
<in>Pfnr_repressor_bond</in> <out>Pfnr_repressor</out> <out>FNR</out>
</reaction> <reaction probability="0.05">
<in>Pfnr_represasor</in> <out>BP</out>
</reaction>
</sim>
