Team:SUSTC-Shenzhen-B/lgd.html

From 2013.igem.org

(Difference between revisions)
Line 90: Line 90:
   <li class="active"><a href="#introduction">Introduction</a></li>
   <li class="active"><a href="#introduction">Introduction</a></li>
                                                 <li><a href="#tutorial">Tutorial</a></li>
                                                 <li><a href="#tutorial">Tutorial</a></li>
-
                                                <li><a href="#reference">Reference</a></li>
 
</ul>
</ul>
</div>
</div>
Line 97: Line 96:
                                         <div id="introduction">
                                         <div id="introduction">
<h3>Introduction</h3>
<h3>Introduction</h3>
-
                                         <p>Short for logical genetic designer, LGD is a genetic circuit CAD that can present the detail information of the engineering bacteria and “calculate” the relationship of related parts based on our database.</p>
+
                                         <p>Short for logical genetic designer, LGD is an online computer aided genetic circuit designer. LGD has two major features: 1, it is online! Unlike other computer aided graphical designing program such as TinkerCell，Our LGD is an online software. 2, it is integrated into the Registry of Standard Genetic Circuit. Every project in the Registry of Standard Genetic Circuit comes with a LGD design, users can make their own modification and improvement in the original design.</p>
-
                                        <p>Synthetic biology is a newly developed subject. It is based on the idea of electronic engineering. For example in traditional biology research scientists always have some trouble dealing with multitudinous and not well defined biology parts. Well electronic engineering seems to help a lot! However we came up with an idea of building up an on-line CAD platform of synthetic biology researchers. Then we build LGD.</p>
+
             
-
                                        <img title="Interface Organization" src="https://static.igem.org/mediawiki/2013/5/56/SUSTC-BLGD1.jpg" class="img-polaroid">
+
                                         </div>
                                         </div>
                                         <div id="tutorial">
                                         <div id="tutorial">
<h3>Tutorial</h3>
<h3>Tutorial</h3>
-
                                         <p>Suppose you have an idea of doing something crazy ha like building up an E-coli producing department of water on Mars!!! Then what should you do? Well when you came to LGD, here comes a circuit which makes the cell have the ability to live on Mars.</p>
+
                                         <p>LGD can be access from the Registry of Standard Genetic Circuit. When you go to the “circuit” page of a project, click the "View and edit in LGD".</p>
 +
                                        <img src="https://static.igem.org/mediawiki/2013/b/b6/SUSTC-BLGD0.png" class="img-polaroid">
 +
                                        <img title="Interface Organization" src="https://static.igem.org/mediawiki/2013/5/56/SUSTC-BLGD1.jpg" class="img-polaroid">
 +
                                        <p>LGD is constitute with the control panel and the coding frame panel on the left.</p>
 +
                                        <p>Let take the project “A Synthetic Genetic EdgeDetection Program (Eco900_00)” for example, if we want to add a newcodingframe in the existing gene circuit just click “Add new codingframe” button. Then you will get a new coding framing:</p>
                                         <img src="https://static.igem.org/mediawiki/2013/d/dc/SUSTC-BLGD2.png" class="img-polaroid">
                                         <img src="https://static.igem.org/mediawiki/2013/d/dc/SUSTC-BLGD2.png" class="img-polaroid">
                                         <p>It seems help a lot!! But you want more skills like eating stones and releasing water? I’m joking, just don’t insistent. Let’s think about something more feasible. How about making them Blink all the time? OK just click “Addnewcodingframe” button then you got a new codingframe cod 2.</p>
                                         <p>It seems help a lot!! But you want more skills like eating stones and releasing water? I’m joking, just don’t insistent. Let’s think about something more feasible. How about making them Blink all the time? OK just click “Addnewcodingframe” button then you got a new codingframe cod 2.</p>
 +
                                        <p>Adding a part by clicking<img src="https://static.igem.org/mediawiki/2013/2/2f/SUSTC-BLGD4.png" />.</p>
                                         <img src="https://static.igem.org/mediawiki/2013/f/f9/SUSTC-BLGD3.png" class="img-polaroid">
                                         <img src="https://static.igem.org/mediawiki/2013/f/f9/SUSTC-BLGD3.png" class="img-polaroid">
-
                                        <p>How about adding more useful parts and generate new species? Click<img src="https://static.igem.org/mediawiki/2013/2/2f/SUSTC-BLGD4.png" />.</p>
+
                                         <p>Select the biobrick type you want, and add to the coding frame.</p>
-
                                        <img src="https://static.igem.org/mediawiki/2013/6/61/SUSTC-BLGD5.png" class="img-polaroid">
+
-
                                         <p>Select what you want and see, it has been added in your coding frame!
+
-
Don’t worry about complicated new relationships between various parts! We have already generate it out!!</p>
+
                                         <img src="https://static.igem.org/mediawiki/2013/6/62/SUSTC-BLGD6.png" class="img-polaroid">
                                         <img src="https://static.igem.org/mediawiki/2013/6/62/SUSTC-BLGD6.png" class="img-polaroid">
-
                                         <p>What’s more you can drag and leave them where ever you like:</p>
+
                                         <p>Other features: you can move the entire coding frame to any position:</p>
                                         <img src="https://static.igem.org/mediawiki/2013/7/7d/SUSTC-BLGD7.png" class="img-polaroid">
                                         <img src="https://static.igem.org/mediawiki/2013/7/7d/SUSTC-BLGD7.png" class="img-polaroid">
-
                                         <p>We will generate the relationship dynamically!</p>
+
                                         <p>Save you project to your local disk:</p>
                                         <img src="https://static.igem.org/mediawiki/2013/1/18/SUSTC-BLGD8.png" class="img-polaroid">
                                         <img src="https://static.igem.org/mediawiki/2013/1/18/SUSTC-BLGD8.png" class="img-polaroid">
-
                                        <p>Well that’s not enough.</p>
 
-
                                        <p>Press Save button you will have a local file xxx.lgd storing your own information about this circuit.</p>
 
-
                                        <p>And you can open and edit it or shearing it with mindroad where ever you like if you can connect the Internet!</p>
 
-
                                        <img src="https://static.igem.org/mediawiki/2013/d/db/SUSTC-BLGD9.png" class="img-polaroid">
 
-
                                        <img src="https://static.igem.org/mediawiki/2013/2/2b/SUSTC-BLGD10.png" class="img-polaroid">
 
                                         <p>What fun!</p>
                                         <p>What fun!</p>
-
                                        </div>
 
-
                                        <div id="reference">
 
-
<h3>Reference</h3>
 
-
                                        <p><a href="https://2012.igem.org/Team:Johns_Hopkins-Software/AutoDesign">[1]https://2012.igem.org/Team:Johns_Hopkins-Software/AutoDesign</a></p>
 
                                         </div>
                                         </div>
</div>
</div>

Revision as of 16:44, 27 September 2013

LGD

Introduction

Short for logical genetic designer, LGD is an online computer aided genetic circuit designer. LGD has two major features: 1, it is online! Unlike other computer aided graphical designing program such as TinkerCell，Our LGD is an online software. 2, it is integrated into the Registry of Standard Genetic Circuit. Every project in the Registry of Standard Genetic Circuit comes with a LGD design, users can make their own modification and improvement in the original design.

Tutorial

LGD can be access from the Registry of Standard Genetic Circuit. When you go to the “circuit” page of a project, click the "View and edit in LGD".

LGD is constitute with the control panel and the coding frame panel on the left.

Let take the project “A Synthetic Genetic EdgeDetection Program (Eco900_00)” for example, if we want to add a newcodingframe in the existing gene circuit just click “Add new codingframe” button. Then you will get a new coding framing:

It seems help a lot!! But you want more skills like eating stones and releasing water? I’m joking, just don’t insistent. Let’s think about something more feasible. How about making them Blink all the time? OK just click “Addnewcodingframe” button then you got a new codingframe cod 2.

Adding a part by clicking.

Select the biobrick type you want, and add to the coding frame.

Other features: you can move the entire coding frame to any position:

Save you project to your local disk:

What fun!

Retrieved from "http://2013.igem.org/Team:SUSTC-Shenzhen-B/lgd.html"