Team:SUSTC-Shenzhen-B/safety.html

From 2013.igem.org

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           <div class="introduction">
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             <h1 class="ui dividing header">Achievement</h1>
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             <h1 class="ui dividing header">Safety</h1>
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             <p class="lead">Below are requirements and our achievements.</p>
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             <p class="lead">Below are contens modified from iGEM Software Division Coding Practices Questionnaire</p>
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          <a class="active item">Bronze Medal requiement</a>
 
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          <a class="active item">Silver Medal requirement</a>
 
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          <a class="active item">Gold Medal requirement</a>
 
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        <h2 class="ui dividing header">Bronze Medal requirement</h2>
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        <section id="motivation"></section>
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           <thead>
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               <th>Requirement</th>
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               <th>No</th>
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               <th>Achievement</th>
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               <th>Question</th>
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              <th>Answer</th>
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                <td>1</td>
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                   Register the team, have a great summer, and have fun attending the Jamboree.
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                   Are you using the iGEM Software repository at github.com/igemsoftware? If you have instead stored your code elsewhere, please explain where and why you have put it there. If your code is not in the iGEM repository, are you using any version control system such as Git, CVS, or SVN?
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                   We really enjoyed the whole summer of learning, coding, debating and laghing. You can also see our <a href="about.html">about</a> us page of wiki.
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                   Yes, we have uploaded our software to the iGEM Software repository.
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                  Create and share a description of the team's project via the iGEM wiki.
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                  Thank you for watching our wiki now!
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                  Present a Poster and Talk at the iGEM Jamboree.
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                  Believe us, we will do it!
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                  Develop and make available via The Registry of Software Toolsan open source software tool that supports synthetic biology based on-BioBrick standard biological parts (remember, the iGEM judges will be looking for substantial team-based software projects).
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                  这个是什么意思?
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        <h2 class="ui dividing header">Bronze Medal requirement</h2>
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        <section id="motivation"></section>
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        <p>To earn a Silver Medal, in addition to the Bronze Medal requirements, a team must do ONE of the following:</p>
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              <th>Requirement</th>
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              <th>Achievement</th>
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                  Provide a detailed, draft specification for the next version of your software tool
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                  See <a href="future.html" target="_blank">future</a> part of this wiki.
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                  Provide a second, distinct (yet complementary) software tools project.
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                  We have put <a href="clotho.html" target="_blank">Circuit List</a>, which is Clotho verion of Circuit+.
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                  Provide a demonstration of their software either as a textual or video tutorial made available on their wiki. This tutorial should explain all the features of the tool as well as provide sample input and output as appropriate.
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                <td>
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                  See <a href="tutorial.html" target="_blank">tutorial</a> part of this wiki.
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        <h2 class="ui dividing header">Glod Medal requirement</h2>
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        <section id="motivation"></section>
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        <p>To earn a Gold Medal, in addition to the Silver Medal requirements, a team must:</p>
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          <thead>
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            <tr>
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              <th>Requirement</th>
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              <th>Achievement</th>
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              <tr>
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                <td>
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                  Have another team utilized the software developed by your team. You must clearly show how your software was used and the results that were obtained?
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                </td>
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                <td>
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                  See <a href="achievement.html" target="_blank">achievement</a> part of this wiki.
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                </td>
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              <tr>
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                <td>
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                  Outline and detail how your software effects Human Practices in Synthetic Biology. Such topics include: safety, security, ethics, or ownership, sharing, and innovation.
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                </td>
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                  One of the key points of Circuit+ is to promote sharing gene circuits. And using Mindmap, we can popularize synthetic biology from specialists to average people by asking them thinking of crazy ideas and put them on Mindmap. Meanwhile, using Mindmap to present circuits is one kind of innovation.
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                  In place of requirement two, a team may instead use SBOL in your software documentation.
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                  Circuit+ supports importing and exporting data in form of SBOL.
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                  Develop and document a new technical standard that supports one of the following: 1.  design of BioBrick Parts or Devices; 2.  construction of BioBrick Parts or Devices; 3.  characterization of BioBrick Parts or Devices; 4.  the analysis, modeling, and simulation of BioBrick Parts or Devices; 5.  the sharing of BioBrick Parts or Devices, either via physical DNA or as information via the internet.
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                <td>
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                  We have two technical standards to define gene circuits and logical gene gate.
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                  Build upon existing software from a previous iGEM competition found on the The Registry of Software Tools
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                <td>
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                  This year we put TTEC into Clotho. TTEC is last year’s project of SUSTC-Shenzhen-B.
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                 </td>
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               </tr>
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        <h2 class="ui dividing header">Question 1</h2>
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        <section id="standard"></section>
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        <p></p>
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        <p></p>
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        <h2 class="ui dividing header">Question 2</h2>
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        <section id="actions"></section>
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        <h3>Subquestion a</h3>
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        <p>Does your software store any private data supplied by the user? (For example: the user's name and email address, passwords, DNA sequences, circuit designs, etc.) If yes, please describe what kind of data is stored. If no, skip the rest of this question and move on to question 3.</p>
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        <p>Yes, our software stores user's name, e-mail address, passwords, experiment data and circuit designs supplied by the users. It also stores chat records between users. But people can choose to open their e-mail address,experiment data and circuit designs to the public. And we advocate this.</p>
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        <h3>Subquestion b</h3>
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        <p>What is the URL or IP address where the user's private data is stored? Where is the physical computer or hard drive that contains the user's private data?</p>
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        <p>Our website is <a href="http://circuitplus.org/" target="_blank">http://circuitplus.org/</a>. Our database is stored in the Internet. For the place of user's private data, there is a file that stores all data of one certain user's information. The URL is not final defined yet. But it would be ordered perfectly. We will upload a text file (.txt) to define all URL after the software is completed. And for the local data, users can set the file path and store data both on the Internet and physical computer.</p>
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        <h3>Subquestion c</h3>
 +
        <p>Please describe any encryption, password protection, etc. that you use to protect the user's data. (It is not mandatory to have such protections, but if you do, describe them.)</p>
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        <p>We do not store users’ password by clear-text passwords or reversible encryption. Meanwhile, we use the prevailing and secure Salt + Hash method to store users’ password. In this way, despite that the server is compromised, the hacker still cannot get the original passwords.</p>
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        <h2 class="ui dividing header">Question 3</h2>
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        <section id="standard"></section>
 +
        <p>Does your software include any other security features? Please describe them here.</p>
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        <p>Yes. We do not record any information related to users’ account or IP to correspond to users’ uploaded information in any way wherever it states Complete Anonymous. We will not ask for signing in unless to make sure this user is a registered user. Though in this way, users’ information is still away to be recorded.</p>
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        <h2 class="ui dividing header">Question 4</h2>
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        <section id="standard"></section>
 +
        <p>Does your software let the user create a design by choosing parts/genes from a list/database, such as the Registry? If so, which lists/databases are included? Is there any restriction on which parts/genes the user can choose?</p>
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        <p>No.</p>
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        <h2 class="ui dividing header">Question 5</h2>
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        <section id="standard"></section>
 +
        <p>Does your software allow users to write new data into any public lists or databases? If so, do you check the new data for errors before allowing it to be written?</p>
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        <p>Yes, users are allowed to submit their own circuit. The information will be added to our own database. Before this, we will check it for errors.</p>
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        <h2 class="ui dividing header">Question 6</h2>
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        <section id="standard"></section>
 +
        <p>Does your software include any other features that encourage the user to create safe designs? Please describe them here.</p>
 +
        <p>We set two kinds of registered users, average and professional. The professional users have an addition function that they can audit circuit information submitted by all users. On one hand, the audition will encourage users to make their design safer to earn satisfaction. On the other hand, the privilege can lead average users become professional; in turn the submitted designs will be safer.</p>
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        <h2 class="ui dividing header">Question 7</h2>
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        <section id="standard"></section>
 +
        <p>Is your team also doing biological work in a wet lab?</p>
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        <p>No.</p>
       </div>
       </div>
     </div>
     </div>

Revision as of 10:46, 28 October 2013

SUSTC-ShenZhen-B

Safety

Below are contens modified from iGEM Software Division Coding Practices Questionnaire

No Question Answer
1 Are you using the iGEM Software repository at github.com/igemsoftware? If you have instead stored your code elsewhere, please explain where and why you have put it there. If your code is not in the iGEM repository, are you using any version control system such as Git, CVS, or SVN? Yes, we have uploaded our software to the iGEM Software repository.

Question 1

Question 2

Subquestion a

Does your software store any private data supplied by the user? (For example: the user's name and email address, passwords, DNA sequences, circuit designs, etc.) If yes, please describe what kind of data is stored. If no, skip the rest of this question and move on to question 3.

Yes, our software stores user's name, e-mail address, passwords, experiment data and circuit designs supplied by the users. It also stores chat records between users. But people can choose to open their e-mail address,experiment data and circuit designs to the public. And we advocate this.

Subquestion b

What is the URL or IP address where the user's private data is stored? Where is the physical computer or hard drive that contains the user's private data?

Our website is http://circuitplus.org/. Our database is stored in the Internet. For the place of user's private data, there is a file that stores all data of one certain user's information. The URL is not final defined yet. But it would be ordered perfectly. We will upload a text file (.txt) to define all URL after the software is completed. And for the local data, users can set the file path and store data both on the Internet and physical computer.

Subquestion c

Please describe any encryption, password protection, etc. that you use to protect the user's data. (It is not mandatory to have such protections, but if you do, describe them.)

We do not store users’ password by clear-text passwords or reversible encryption. Meanwhile, we use the prevailing and secure Salt + Hash method to store users’ password. In this way, despite that the server is compromised, the hacker still cannot get the original passwords.

Question 3

Does your software include any other security features? Please describe them here.

Yes. We do not record any information related to users’ account or IP to correspond to users’ uploaded information in any way wherever it states Complete Anonymous. We will not ask for signing in unless to make sure this user is a registered user. Though in this way, users’ information is still away to be recorded.

Question 4

Does your software let the user create a design by choosing parts/genes from a list/database, such as the Registry? If so, which lists/databases are included? Is there any restriction on which parts/genes the user can choose?

No.

Question 5

Does your software allow users to write new data into any public lists or databases? If so, do you check the new data for errors before allowing it to be written?

Yes, users are allowed to submit their own circuit. The information will be added to our own database. Before this, we will check it for errors.

Question 6

Does your software include any other features that encourage the user to create safe designs? Please describe them here.

We set two kinds of registered users, average and professional. The professional users have an addition function that they can audit circuit information submitted by all users. On one hand, the audition will encourage users to make their design safer to earn satisfaction. On the other hand, the privilege can lead average users become professional; in turn the submitted designs will be safer.

Question 7

Is your team also doing biological work in a wet lab?

No.