Team:SUSTC-Shenzhen-B/safty.html

From 2013.igem.org

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                                         <div id="overview">
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                                        <h1>iGEM Software Division Coding Practices Questionnaire</h1>
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<h2>Overview</h2>
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                                         <div id="name">
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<p>Our project, 3 Miao BioCommunity, is different from all the iGem software projects in the past, for we have an ambition to create a community for the whole synthetic biology. This community is based on our original idea, the Mind Road. Mind Road is a net structural mind map that can help users think and share ideas, which can function as a platform for all synthetic biology ideas exchange. </p>
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<h2>Team name</h2>
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<p>Based on the Mind Road, our community now has a theme—— share ideas. With this theme, we intend to build our 3Miao BioCommunity. In this community, we offer LGD and TTEC as useful tool for users to process the ideas. LGD is a genetic circuit designer which can present the logical relationship of related parts. What is more, users can also post their own ideas and comment on others’ work, like Facebook and Twitter.</p>
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<p>SUSTC-Shenzhen-B</p>
                                         </div>
                                         </div>
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                                        <div id="q1">
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<h2>Q1</h2>
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<p>Are you using the iGEM Software repository at github.com/igemsoftware? If
 +
you have instead stored your code elsewhere, please explain where and why you have put
 +
it there. If your code is not in the iGEM repository, are you using any version control
 +
system such as Git, CVS, or SVN?</p>
 +
<p style="background: #333">No, we never use the iGEM Software repository. We have stored our code in our own server. Because our project is to built up a synthetic biology community on web. We haven't used any version control system.</p>
 +
</div>
 +
                                        <div id="q2">
 +
<h2>Q2: User Data</h2>
 +
<p>a. Does your software store any private data supplied by the user? (For example:
 +
the user's name and email address, passwords, DNA sequences, circuit designs,
 +
etc.) If yes, please describe what kind of data is stored. If no, skip the rest of this
 +
question and move on to question 3.</p>
 +
<p style="background: #333;">Yes, our software stores user's name, e-mail address,passwords, experiment data and circuit designs supplied by the users. It also stores chat records between users. But people can choose to open their e-mail address，experiment data and circuit designs to the public. And we advocate this.</p>
 +
<p>b. What is the URL or IP address where the user's private data is stored? Where is
 +
the physical computer or hard drive that contains the user's private data?</p>
 +
<p style="background: #333;">Our website is "www.3miaocommunity.com" all our database is stored in the Internet. For the place of user's private data, there is  a file that stores all data of one certain user's information. The URL is not final defined yet. But it would be ordered perfectly. We will upload a text file(.txt) to define all URL after the software is completed. And for the local data, users can set the  file path and store data both on the Internet and physical computer.</p>
 +
<p>c. Please describe any encryption, password protection, etc. that you use to protect
 +
the user's data. (It is not mandatory to have such protections, but if you do,
 +
describe them.)</p>
 +
<p style="background: #333;">We are trying to apply MD5 encryption, an one-way encryption to protect user's data. it means that we encrypt user passwords in to MD5 value and then contrast it with the MD5 stored in the database. For the data transfered between server and client is only MD5(it can't be decode back) ,we can protect  the user's data simpleness.</p>
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</div>
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                                         <div id="background">
                                         <div id="background">
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<h2>Background</h2>
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<h2>Q1</h2>
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<p>Before we got our idea, we had reviewed all the software projects of the last three years and classified them into 6 categories (fig1). As showing in the picture, designing CAD takes up the majority of these projects. As expected, most of them share the similar ideas. After a certain time of thinking, we found that it is really reasonable that iGem software projects can hardly be quite innovative, for the lack of professional knowledge and the limitation of the usage of software during synthetic biology study. But also, if we continue to follow these ideas, our project is far away from being creative or original. Then it occurred to us, why don’t we write a program to help at least the wet lab members to get new ideas? Thus, we decided to make a difference, to create our own Mind Road—— a net structural mind map—— to assist either iGEMers or professional synthetic biology researchers to come up with and share their ideas.</p>
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<p>Are you using the iGEM Software repository at github.com/igemsoftware? If
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<p>Even though the mind map idea is good, it is not good enough. What’s more, comparing with computer software, synthetic biology lacks such community for knowledge and skills exchange, like GitHub. So setting Mind Road as the theme, we decided to take a bold step, to establish a simple and free online platform with high interaction ability intended for everyone interested in synthetic biology.</p>
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you have instead stored your code elsewhere, please explain where and why you have put
 +
it there. If your code is not in the iGEM repository, are you using any version control
 +
system such as Git, CVS, or SVN?</p>
 +
</div>
 +
 
 +
                                        <div id="q3">
 +
<h2>Q3</h2>
 +
<p>Are you using the iGEM Software repository at github.com/igemsoftware? If
 +
you have instead stored your code elsewhere, please explain where and why you have put
 +
it there. If your code is not in the iGEM repository, are you using any version control
 +
system such as Git, CVS, or SVN?</p>
 +
</div>
 +
 
 +
                                        <div id="background">
 +
<h2>Q1</h2>
 +
<p>Does your software include any other security features? Please describe them here.</p>
 +
<p style="background: #333;">Yes, our software includes other two security features, Restricted Rights and Information Verification. Restricted Rights means a user only have some limited rights. And Information Verification is a process to verify gene circuits and information submitted by users.</p>
 +
</div>
 +
 
 +
                                        <div id="q4">
 +
<h2>Q4</h2>
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<p>Does your software let the user create a design by choosing parts/genes from a
 +
list/database, such as the Registry? If so, which lists/databases are included? Is there any
 +
restriction on which parts/genes the user can choose?</p>
 +
<p style="background: #333;">Yes, a part of our software let user create a gene circuit from a database. The database is built up by ourselves and includes many biobricks that we chose and the logical relationship between each part. No, there is no restriction on which parts the user can choose. </p>
 +
</div>
 +
                                        <div id="q5">
 +
<h2>Q5</h2>
 +
<p>Does your software allow users to write new data into any public lists or databases? If so,
 +
do you check the new data for errors before allowing it to be written?</p>
 +
<p style="background: #333;">Yes, a part of our software let user create a gene circuit from a database. The database is built up by ourselves and includes many biobricks that we chose and the logical relationship between each part. No, there is no restriction on which parts the user can choose. </p>
 +
</div>
 +
                                        <div id="q6">
 +
<h2>Q6</h2>
 +
<p>Does your software include any other features that encourage the user to create safe
 +
designs? Please describe them here.</p>
 +
<p style="background: #333;">We are working hard to apply a encourage mechanism that makes users willing to do a safe design, such as adding virtual currency or applying review mechanism. So that users may diligently make their design more safe to earn satisfaction. We also print the safe agreement on our websites to remind users design safety.</p>
 +
</div>
 +
                                        <div id="q7">
 +
<h2>Q7</h2>
 +
<p>Does your software let the user create a design by choosing parts/genes from a
 +
list/database, such as the Registry? If so, which lists/databases are included? Is there any
 +
restriction on which parts/genes the user can choose?</p>
 +
<p style="background: #333;">Yes, a part of our software let user create a gene circuit from a database. The database is built up by ourselves and includes many biobricks that we chose and the logical relationship between each part. No, there is no restriction on which parts the user can choose. </p>
 +
</div>
 +
                                        <div id="q8">
 +
<h2>Q8</h2>
 +
<p>Does your software let the user create a design by choosing parts/genes from a
 +
list/database, such as the Registry? If so, which lists/databases are included? Is there any
 +
restriction on which parts/genes the user can choose?</p>
 +
<p style="background: #333;">Yes, a part of our software let user create a gene circuit from a database. The database is built up by ourselves and includes many biobricks that we chose and the logical relationship between each part. No, there is no restriction on which parts the user can choose. </p>
</div>
</div>
 +
</div>
</div>
</div>
</div>

Revision as of 13:56, 27 September 2013

iGEM Software Division Coding Practices Questionnaire

Team name

SUSTC-Shenzhen-B

Q1

Are you using the iGEM Software repository at github.com/igemsoftware? If you have instead stored your code elsewhere, please explain where and why you have put it there. If your code is not in the iGEM repository, are you using any version control system such as Git, CVS, or SVN?

No, we never use the iGEM Software repository. We have stored our code in our own server. Because our project is to built up a synthetic biology community on web. We haven't used any version control system.

Q2: User Data

a. Does your software store any private data supplied by the user? (For example: the user's name and email address, passwords, DNA sequences, circuit designs, etc.) If yes, please describe what kind of data is stored. If no, skip the rest of this question and move on to question 3.

Yes, our software stores user's name, e-mail address,passwords, experiment data and circuit designs supplied by the users. It also stores chat records between users. But people can choose to open their e-mail address，experiment data and circuit designs to the public. And we advocate this.

b. What is the URL or IP address where the user's private data is stored? Where is the physical computer or hard drive that contains the user's private data?

Our website is "www.3miaocommunity.com" all our database is stored in the Internet. For the place of user's private data, there is a file that stores all data of one certain user's information. The URL is not final defined yet. But it would be ordered perfectly. We will upload a text file(.txt) to define all URL after the software is completed. And for the local data, users can set the file path and store data both on the Internet and physical computer.

c. Please describe any encryption, password protection, etc. that you use to protect the user's data. (It is not mandatory to have such protections, but if you do, describe them.)

We are trying to apply MD5 encryption, an one-way encryption to protect user's data. it means that we encrypt user passwords in to MD5 value and then contrast it with the MD5 stored in the database. For the data transfered between server and client is only MD5(it can't be decode back) ,we can protect the user's data simpleness.

Q1

Are you using the iGEM Software repository at github.com/igemsoftware? If you have instead stored your code elsewhere, please explain where and why you have put it there. If your code is not in the iGEM repository, are you using any version control system such as Git, CVS, or SVN?

Q3

Are you using the iGEM Software repository at github.com/igemsoftware? If you have instead stored your code elsewhere, please explain where and why you have put it there. If your code is not in the iGEM repository, are you using any version control system such as Git, CVS, or SVN?

Q1

Does your software include any other security features? Please describe them here.

Yes, our software includes other two security features, Restricted Rights and Information Verification. Restricted Rights means a user only have some limited rights. And Information Verification is a process to verify gene circuits and information submitted by users.

Q4

Does your software let the user create a design by choosing parts/genes from a list/database, such as the Registry? If so, which lists/databases are included? Is there any restriction on which parts/genes the user can choose?

Yes, a part of our software let user create a gene circuit from a database. The database is built up by ourselves and includes many biobricks that we chose and the logical relationship between each part. No, there is no restriction on which parts the user can choose.

Q5

Does your software allow users to write new data into any public lists or databases? If so, do you check the new data for errors before allowing it to be written?

Yes, a part of our software let user create a gene circuit from a database. The database is built up by ourselves and includes many biobricks that we chose and the logical relationship between each part. No, there is no restriction on which parts the user can choose.

Q6

Does your software include any other features that encourage the user to create safe designs? Please describe them here.

We are working hard to apply a encourage mechanism that makes users willing to do a safe design, such as adding virtual currency or applying review mechanism. So that users may diligently make their design more safe to earn satisfaction. We also print the safe agreement on our websites to remind users design safety.

Q7

Does your software let the user create a design by choosing parts/genes from a list/database, such as the Registry? If so, which lists/databases are included? Is there any restriction on which parts/genes the user can choose?

Yes, a part of our software let user create a gene circuit from a database. The database is built up by ourselves and includes many biobricks that we chose and the logical relationship between each part. No, there is no restriction on which parts the user can choose.

Q8

Does your software let the user create a design by choosing parts/genes from a list/database, such as the Registry? If so, which lists/databases are included? Is there any restriction on which parts/genes the user can choose?

Yes, a part of our software let user create a gene circuit from a database. The database is built up by ourselves and includes many biobricks that we chose and the logical relationship between each part. No, there is no restriction on which parts the user can choose.

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