Team:SYSU-Software

From 2013.igem.org

(Difference between revisions)
(Prototype team page)
 
(99 intermediate revisions not shown)
Line 1: Line 1:
-
<!-- *** What falls between these lines is the Alert Box!  You can remove it from your pages once you have read and understood the alert *** -->
+
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en" xmlns:m="http://schemas.microsoft.com/office/2004/12/omml" xmlns:v="urn:schemas-microsoft-com:vml" xmlns:o="urn:schemas-microsoft-com:office:office">
 +
<head>
 +
<title>Team:SYSU-Software</title>
-
<html>
+
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
-
<div id="box" style="width: 700px; margin-left: 137px; padding: 5px; border: 3px solid #000; background-color: #fe2b33;">
+
<meta http-equiv="Content-Style-Type" content="text/css" />
-
<div id="template" style="text-align: center; font-weight: bold; font-size: large; color: #f6f6f6; padding: 5px;">
+
-
This is a template page. READ THESE INSTRUCTIONS.
+
-
</div>
+
-
<div id="instructions" style="text-align: center; font-weight: normal; font-size: small; color: #f6f6f6; padding: 5px;">
+
-
You are provided with this team page template with which to start the iGEM season.  You may choose to personalize it to fit your team but keep the same "look." Or you may choose to take your team wiki to a different level and design your own wiki.  You can find some examples <a href="https://2009.igem.org/Help:Template/Examples">HERE</a>.
+
-
</div>
+
-
<div id="warning" style="text-align: center; font-weight: bold; font-size: small; color: #f6f6f6; padding: 5px;">
+
-
You <strong>MUST</strong> have all of the pages listed in the menu below with the names specified. PLEASE keep all of your pages within your teams namespace. 
+
-
</div>
+
-
</div>
+
-
</html>
+
-
<!-- *** End of the alert box *** -->
+
<link href="https://raw.github.com/lovedayluk/iGEM2013/master/style.css?action=raw&ctype=text/css" rel="stylesheet" type="text/css" >
 +
<link href="https://2012.igem.org/Team:SYSU-Software/prefix.css?action=raw&ctype=text/css" rel="stylesheet" type="text/css" >
 +
<link href="https://2012.igem.org/Team:SYSU-Software/bootstrap.css?action=raw&ctype=text/css" rel="stylesheet" type="text/css" />
 +
<link href="https://2012.igem.org/Team:SYSU-Software/flatui.css?action=raw&ctype=text/css" rel="stylesheet" type="text/css" />
 +
<link href="https://2013.igem.org/Team:SYSU-Software/home.css?action=raw&ctype=text/css" rel="stylesheet" type="text/css" />
 +
<!-- <link href="home/css/home.css" rel="stylesheet" type="text/css" /> -->
 +
<link href="https://2013.igem.org/Team:SYSU-Software/header.css?action=raw&amp;ctype=text/css" rel="stylesheet" type="text/css" />
 +
<link href="https://2013.igem.org/Team:SYSU-Software/footer.css?action=raw&amp;ctype=text/css" rel="stylesheet" type="text/css" />
-
{|align="justify"
+
<script src="https://2013.igem.org/Team:SYSU-Software/jquery-1.9.1.min.js?action=raw&ctype=text/javascript" type="text/javascript"></script>
-
|You can write a background of your team here. Give us a background of your team, the members, etc. Or tell us more about something of your choosing.
+
<script src="https://2013.igem.org/Team:SYSU-Software/bootstrap.min.js?action=raw&ctype=text/javascript" type="text/javascript"></script>
-
|[[Image:SYSU-Software_logo.png|200px|right|frame]]
+
<script src="https://2013.igem.org/Team:SYSU-Software/prefix.js?action=raw&ctype=text/javascript" type="text/javascript"></script>
-
|-
+
<!-- <script src="home/css/prefix.js" type="text/javascript"></script> -->
-
|
+
<script src="https://2013.igem.org/Team:SYSU-Software/home.js?action=raw&ctype=text/javascript" type="text/javascript"></script>
-
''Tell us more about your project. Give us background. Use this as the abstract of your project.  Be descriptive but concise (1-2 paragraphs)''
+
<!-- <script src="home/css/home.js" type="text/javascript"></script> -->
-
|[[Image:SYSU-Software_team.png|right|frame|Your team picture]]
+
-
|-
+
-
|
+
-
|align="center"|[[Team:SYSU-Software | Team SYSU-Software]]
+
-
|}
+
-
<!--- The Mission, Experiments --->
+
<!-- <head> -->
 +
<!-- <meta charset="utf-8"> -->
 +
<!-- <title>new</title> -->
 +
</head>
-
{| style="color:#1b2c8a;background-color:#0c6;" cellpadding="3" cellspacing="1" border="1" bordercolor="#fff" width="62%" align="center"
+
 
-
!align="center"|[[Team:SYSU-Software|Home]]
+
 
-
!align="center"|[[Team:SYSU-Software/Team|Team]]
+
 
-
!align="center"|[https://igem.org/Team.cgi?year=2013&team_name=SYSU-Software Official Team Profile]
+
<body>
-
!align="center"|[[Team:SYSU-Software/Project|Project]]
+
<!--header-->
-
!align="center"|[[Team:SYSU-Software/Parts|Parts Submitted to the Registry]]
+
<div id="navigation"></div>
-
!align="center"|[[Team:SYSU-Software/Modeling|Modeling]]
+
<div class="wrapper">
-
!align="center"|[[Team:SYSU-Software/Notebook|Notebook]]
+
  <div id="home-container">
-
!align="center"|[[Team:SYSU-Software/Safety|Safety]]
+
<div id="home-banner">
-
!align="center"|[[Team:SYSU-Software/Attributions|Attributions]]
+
<div id="banner-left" class="banner-tips">
-
|}
+
<div>
 +
<h1 class="h">CAST </h1>
 +
<h3 class="h">Designer</h3>
 +
</div>
 +
<span>Computer Aided Synbio Tool-<br/>An Integrated Tool for Synthetic Biology</span>
 +
</div>
 +
<!-- <div id="banner-middle" class="banner-tips"><img src="https://static.igem.org/mediawiki/2013/e/eb/Robot_header.png"></div> -->
 +
<div id="banner-middle" class="banner-tips"><img src="https://static.igem.org/mediawiki/2013/a/a1/Cast_logo_robot_head.png"><b>Welcome</b></div>
 +
<div id="banner-right" class="banner-tips">
 +
<!-- <a class="btn btn-inverse" href="https://github.com/igemsoftware/SYSU-Software2013" target="_blank" style="color:white;background:#34495e;"><img src="https://static.igem.org/mediawiki/igem.org/c/cc/Cast_Download_logo.png" >Download</a> -->
 +
<div id="download-cloud" class="moving"><a href="https://github.com/igemsoftware/SYSU-Software2013" target="_blank"><img src="https://static.igem.org/mediawiki/2013/9/99/Cast_download_cloud.png"><span>Download</span></a></div>
 +
<div id="download-cloud" class="moving"><a href="https://2013.igem.org/Team:SYSU-Software/BiobrickBlastOnline" target="_blank"><img src="https://static.igem.org/mediawiki/2013/a/a9/SYSU_Biobrick_Blast_Down.png"></a></div>
 +
<!-- <div>Click here to download the software</div> -->
 +
</div>
 +
</div>
 +
 
 +
<div id="footer-introduction" class="footer">
 +
<!-- <h2>Welcome</h2> -->
 +
<!-- <img src="https://static.igem.org/mediawiki/2013/7/7c/cast_body_text_background.png"/> -->
 +
<div id="footer-introduction-content">
 +
<!-- <p>Synthetic Biology, depending on interdisciplinary knowledge and experience, cooperates wet and dry experiments to engineer the artificial biological systems. Here, our team has developed an integrated tool, <b>CAST (Computer Aided Synbio Tool)</b>, to address specific technical challenges in synthetic biology. Our software can automatically perform the regulatory networks and gene circuits designing with Biobricks and other regulatory elements, modeling, vector designing and proposal build. User can also optimize or alter the default methods to fulfill some further demands. All of the designed elements, networks and vectors can be stored in database to be shared through CAST. In addition, we incorporated <a href="https://2013.igem.org/Team:SYSU-Software/wetlab"><b>wetlab experimentation</b></a> into our project to validate our <a href="https://2013.igem.org/Team:SYSU-Software/model"><b>new simulation model</b></a> that work with standard dynamic characteristic. Altogether, <b>the combination of the <font color="#ff0000">design automation</font>, <font color="#ff0000">innovative models and algorithms</font>, and <font color="#ff0000">wetlab validation</font> makes complex biological systems accessible to researchers who want rapid, intuitive, and high-quality accomplish their designs</b>. -->
 +
<!-- </p> -->
 +
 
 +
<div class="p">
 +
<p>Synthetic Biology, depending on interdisciplinary knowledge and experience, cooperates wet and dry experiments to engineer the artificial biological systems. Our team has developed an integrated tool, <b>CAST (Computer Aided Synbio Tool)</b>, to address specific technical challenges in synthetic biology. Our software can automatically perform the regulatory networks and gene circuits designing, modeling, vector designing and proposal build.All of the design can be stored in database to be shared through CAST. In addition, we incorporated <a href="https://2013.igem.org/Team:SYSU-Software/wetlab"><b>wetlab experimentation</b></a> into our project to validate our <a href="https://2013.igem.org/Team:SYSU-Software/model"><b>new simulation model</b></a> that work with standard dynamic characteristic. Altogether, <b>the combination of the <font>design automation</font>, <font>innovative models and algorithms</font>, and <font>wetlab validation</font> makes complex biological systems accessible to researchers who want rapid, intuitive, and high-quality accomplish their designs.</b>
 +
</p>
 +
<div id="s-cloud"><img src="https://static.igem.org/mediawiki/2013/c/c2/Cast_s_cloud.png"/></div>
 +
</div>
 +
</div>
 +
</div>
 +
 
 +
<div id="home-robot">
 +
<div id="bg"><img src="https://static.igem.org/mediawiki/2013/7/7c/Cast_bg.png"></div>
 +
<div id="component-1" class="component">
 +
<a href="https://2013.igem.org/Team:SYSU-Software/designer#part2" class="component-tooltip"  data-placement="top" title data-original-title="Is that possible that a software is able to generate gene circuits automatically? We are proud to announce that CAST can. According to users’ network constructed, our software will find all appropriate components to fabricate demanded gene circuits. Adjusting the parameters of these components, CAST will modify the gene circuits to fulfill your wish.
 +
" ><img src="https://static.igem.org/mediawiki/2013/1/1f/Component1.png"></a>
 +
</div>
 +
<div id="component-2" class="component">
 +
<a href="https://2013.igem.org/Team:SYSU-Software/designer#part3" class="component-tooltip"  data-placement="top" title data-original-title="Real-time reaction is a important feature for excellent software. While you are adjusting the parameters, the change on the model will reflect simultaneously and present the expression curve. To gain a more practical result, CAST can perform a stochastic or time-delay model.
 +
"><img src="https://static.igem.org/mediawiki/2013/3/3b/Component2.png"></a>
 +
</div>
 +
<div id="component-3-0" class="component">
 +
<a href="https://2013.igem.org/Team:SYSU-Software/designer#part2" class="component-tooltip"  data-placement="top" title data-original-title="Is that possible that a software is able to generate gene circuits automatically? We are proud to announce that CAST can. According to users’ network constructed, our software will find all appropriate components to fabricate demanded gene circuits. Adjusting the parameters of these components, CAST will modify the gene circuits to fulfill your wish.
 +
"><img src="https://static.igem.org/mediawiki/2013/0/06/Component3_1.png"></a>
 +
</div>
 +
<div id="component-3-1" class="component">
 +
<a href="https://2013.igem.org/Team:SYSU-Software/designer#part1" class="component-tooltip"  data-placement="top" title data-original-title="Is that possible that a software is able to generate gene circuits automatically? We are proud to announce that CAST can. According to users’ network constructed, our software will find all appropriate components to fabricate demanded gene circuits. Adjusting the parameters of these components, CAST will modify the gene circuits to fulfill your wish.
 +
"><img src="https://static.igem.org/mediawiki/2013/0/06/Component3_1.png"></a>
 +
</div>
 +
 
 +
<div id="component-4" class="component">
 +
<a href="https://2013.igem.org/Team:SYSU-Software/designer#part2" class="component-tooltip"  data-placement="top" title data-original-title="Is that possible that a software is able to generate gene circuits automatically? We are proud to announce that CAST can. According to users’ network constructed, our software will find all appropriate components to fabricate demanded gene circuits. Adjusting the parameters of these components, CAST will modify the gene circuits to fulfill your wish.
 +
"><img src="https://static.igem.org/mediawiki/2013/6/6e/Component4.png"></a>
 +
</div>
 +
<div id="component-5" class="component">
 +
<a href="https://2013.igem.org/Team:SYSU-Software/designer#part4" class="component-tooltip"  data-placement="top" title data-original-title="As automation is our soul, the plasmid is constructed without your worrying. The plasmid will be presented intuitively and detailedly. Even better, you can select different assembly standard as you wish.
 +
"><img src="https://static.igem.org/mediawiki/2013/b/b1/Component5.png"></a>
 +
</div>
 +
<div id="component-6" class="component">
 +
<a href="https://2013.igem.org/Team:SYSU-Software/designer#part5" class="component-tooltip"  data-placement="top" title data-original-title="Being a amateur and find it hard to begin? Do not worry! CAST is a considerable assistant. Your can accomplish your synthetic biology design under our detailed direction."><img src="https://static.igem.org/mediawiki/2013/c/cc/Component6.png"></a>
 +
</div>
 +
<div id="component-7" class="component">
 +
<a href="https://2013.igem.org/Team:SYSU-Software/designer#part5" class="component-tooltip"  data-placement="top" title data-original-title="Being a amateur and find it hard to begin? Do not worry! CAST is a considerable assistant. Your can accomplish your synthetic biology design under our detailed direction."><img src="https://static.igem.org/mediawiki/2013/b/b9/Component7.png"></a>
 +
</div>
 +
<div id="component-ecoli" class="component">
 +
<a href="https://2013.igem.org/Team:SYSU-Software/designer#part1" class="component-tooltip"  data-placement="top" title data-original-title="People want function proteins instead of complicated regulatory elements accompanied. We offer a simple network designer to programme the basic regulatory relations among interested proteins-----all regulatory elements are concealed, just to emphasize the protein collaboration."><img src="https://static.igem.org/mediawiki/2013/d/d0/Component_coli.png"></a>
 +
</div>
 +
<div id="component-regulation-network" class="component">
 +
<a href="https://2013.igem.org/Team:SYSU-Software/designer#part1" class="component-tooltip"  data-placement="top" title data-original-title="People want function proteins instead of complicated regulatory elements accompanied. We offer a simple network designer to programme the basic regulatory relations among interested proteins-----all regulatory elements are concealed, just to emphasize the protein collaboration."><img src="https://static.igem.org/mediawiki/2013/d/d0/Component_regulation_network.png"></a>
 +
</div>
 +
</div>
 +
    </div>
 +
  <!--page footer-->
 +
  <div id="home-team-footer">
 +
    <div id="team-sub">
 +
<div id="footer-address" class="footer">
 +
Sun Yat-Sen University, Guangzhou, China<br/>
 +
135# Xingang Rd.(W.), Haizhu Guangzhou, P.R.China
 +
</div>
 +
    </div>
 +
   
 +
 
 +
  </div>
 +
</div>
 +
<script type="text/javascript">
 +
$(".component-tooltip").tooltip({delay:{show:50},placement:'right'});
 +
</script>
 +
<!--page footer-->
 +
<div id="sysu-footer">
 +
    <img id="" src="https://static.igem.org/mediawiki/2013/2/28/Sysu-page-footer.png">
 +
  </div>
 +
 
 +
</body>
 +
</html>

Latest revision as of 08:35, 3 June 2014

Team:SYSU-Software

Retrieved from "http://2013.igem.org/Team:SYSU-Software"