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Team:Stanford-Brown/Projects/CRISPR
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== '''Lab Notebook''' == | == '''Lab Notebook''' == | ||
== '''Biobricks''' == | == '''Biobricks''' == | ||
| - | ''' | + | '''[http://parts.igem.org/Part:BBa_K1218011/ BBa_K1218011 (pCas9)]''' This part codes for the tracrRNA, Cas9 protein, and minimal CRISPR array of a type II CRISPR-Cas system. The CRISPR array includes two CRISPR repeats separated by a spacer with two BsaI sites. Digestion with BsaI allows for insertion of a new spacer, thus changing the sequence targeted by Cas9. |
| - | ''' | + | '''[http://parts.igem.org/Part:BBa_K1218019/ BBa_K1218019 (CASCADE Complex)]''' This polycistronic sequence contains the CasABCDE genes that form the CASCADE complex. Functions in the innate CRISPR-Cas immune system of Escherichia coli. |
| - | ''' | + | '''[http://parts.igem.org/Part:BBa_K1218014/ BBa_K1218014 (dCas9-ω Activator)]''' This part codes for the tracrRNA, a mutated Cas9 protein, and minimal CRISPR array of a type II CRISPR-Cas system. The CRISPR array includes two CRISPR repeats separated by a spacer with two BsaI sites. Digestion with BsaI allows for insertion of a new spacer, thus changing the sequence targeted by Cas9. However, the Cas9 protein is mutated or "dead" and is fused to a RNAP omega ("w") subunit. Binding of the Cas9-RNAP-subunit fusion activates transcription of the targeted gene. |
== '''Protocols''' == | == '''Protocols''' == | ||
Revision as of 03:36, 27 September 2013
Contents |
Introduction
CRISPR-Cas is a bacterial immune system that remembers and targets foreign viral DNA by storing DNA sequences, or spacers, between clustered regularly interspaced short palindromic repeats (CRISPRs). RNA transcripts of the spacers are then used to sense homologous DNA, which is cleaved by CRISPR-associated (Cas) proteins.
Lab Notebook
Biobricks
BBa_K1218011 (pCas9) This part codes for the tracrRNA, Cas9 protein, and minimal CRISPR array of a type II CRISPR-Cas system. The CRISPR array includes two CRISPR repeats separated by a spacer with two BsaI sites. Digestion with BsaI allows for insertion of a new spacer, thus changing the sequence targeted by Cas9.
BBa_K1218019 (CASCADE Complex) This polycistronic sequence contains the CasABCDE genes that form the CASCADE complex. Functions in the innate CRISPR-Cas immune system of Escherichia coli.
BBa_K1218014 (dCas9-ω Activator) This part codes for the tracrRNA, a mutated Cas9 protein, and minimal CRISPR array of a type II CRISPR-Cas system. The CRISPR array includes two CRISPR repeats separated by a spacer with two BsaI sites. Digestion with BsaI allows for insertion of a new spacer, thus changing the sequence targeted by Cas9. However, the Cas9 protein is mutated or "dead" and is fused to a RNAP omega ("w") subunit. Binding of the Cas9-RNAP-subunit fusion activates transcription of the targeted gene.
