Team:Bielefeld-Germany/Project/MFC

From 2013.igem.org

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==Media and carbon sources==
==Media and carbon sources==
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As explained previously (XXXLINKHIER), ''E. coli'' have to respire under aerobic conditions in order for the microbial fuel cell to work. This can prove to be problematic when using media such as LB (LINK HIER XXX), because in the absence of oxygen the bacteria might use the available carbon source for fermentation. To prevent this, the different strains which were tested in the fuel cell were cultivated in M9 minimal medium (XXX LINK ZUM REZEPT). After consulting about the fermentation problem  with Dr. Falk Harnisch (XXX LINK HIER), we decided to supplement the M9 medium with different carbon sources to test how this affects bacterial growth under anaerobic conditions. The goal of this experiment was to find a carbon source which is well suited for aerobic respiration, but can’t be used for fermentation by the bacteria. <br>
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As explained previously (XXXLINKHIER), ''E. coli'' have to respire under aerobic conditions in order for the microbial fuel cell to work. This can prove to be problematic when using media such as [https://2013.igem.org/Team:Bielefeld-Germany/Labjournal/ProtocolsPrograms#LB_medium LB], because in the absence of oxygen the bacteria might use the available carbon source for fermentation. To prevent this, the different strains which were tested in the fuel cell were cultivated in [https://2013.igem.org/Team:Bielefeld-Germany/Labjournal/ProtocolsPrograms#M9_Medium M9 minimal medium]. After consulting about the fermentation problem  with [https://2013.igem.org/Team:Bielefeld-Germany/Human_Practice/Experts#CeBiTec-Kolloquium Dr. Falk Harnisch], we decided to supplement the M9 medium with different carbon sources to test how this affects bacterial growth under anaerobic conditions. The goal of this experiment was to find a carbon source which is well suited for aerobic respiration, but can’t be used for fermentation by the bacteria. <br>
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Tests were carried out with glucose, glycerol and acetate. The amount of substrate supplemented into the medium was adjusted, so that the amount of carbon atoms was the same for each culture. The concentrations were 5.0 g/L for glucose, 5.1 g/L for glycerol and 6.8 g/L for acetate. In all cultivation experiments, two biological replica of every strain and substrate combination were prepared and each sample was diluted and measured twice. Anaerobic cultivations were conducted in 30 mL test tubes with rubber lids. Samples were taken by piercing the lid with a syringe. For aerobic cultivations, shaker flasks were used. The strains tested were the KRX wild-type and the KRX oprF T7 (BBa_K1172502) strain. The latter overexpresses large porin-proteins when induced with rhamnose. Induction was carried out with XXX mL of a XXX g/L rhamnose solution 1 hour after inoculation. All cultures were inoculated with an optical density of 0.22. Temperature was kept at 37°C during cultivation.
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Tests were carried out with glucose, glycerol and acetate. The amount of substrate supplemented into the medium was adjusted, so that the amount of carbon atoms was the same for each culture. The concentrations were 5.0 g/L for glucose, 5.1 g/L for glycerol and 6.8 g/L for acetate. In all cultivation experiments, two biological replica of every strain and substrate combination were prepared and each sample was diluted and measured twice. Anaerobic cultivations were conducted in 30 mL test tubes with rubber lids. Samples were taken by piercing the lid with a syringe. For aerobic cultivations, shaker flasks were used. The strains tested were the KRX wild-type and the KRX oprF T7 ([http://parts.igem.org/wiki/index.php?title=Part:BBa_K1172502 BBa_K1172502]) strain. The latter overexpresses large porin-proteins when induced with rhamnose. Induction was carried out with XXX mL of a XXX g/L rhamnose solution 1 hour after inoculation. All cultures were inoculated with an optical density of 0.22. Temperature was kept at 37°C during cultivation.
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[[File:IGEM_Bielefeld2013_Growthmfcmedia.jpg|500px|left|thumb|'''Figure 1:''' Growth of ‘‘E. coli’’ KRX and ‘‘E. coli’’ KRX BBa_K1172503 strains on media supplemented with different carbon sources under anaerobic conditions.]]
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[[File:IGEM_Bielefeld2013_Growthmfcmedia.jpg|500px|left|thumb|'''Figure 1:''' Growth of ''E. coli'' KRX and ''E. coli'' KRX BBa_K1172503 strains on media supplemented with different carbon sources under anaerobic conditions.]]
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Figure 1 shows that, under anaerobic conditions, both strains grow well on glucose but seem to be unable to use acetate or glycerol efficiently.
Figure 1 shows that, under anaerobic conditions, both strains grow well on glucose but seem to be unable to use acetate or glycerol efficiently.
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[[File:IGEM_Bielefeld2013_Growthmfcmedia2.jpg|500px|left|thumb|'''Figure 2:''' Growth of ''E. coli'' KRX and ''E. coli'' KRX BBa_K1172503 strains on media supplemented with different carbon sources under aerobic conditions after 26 hours.]]
[[File:IGEM_Bielefeld2013_Growthmfcmedia2.jpg|500px|left|thumb|'''Figure 2:''' Growth of ''E. coli'' KRX and ''E. coli'' KRX BBa_K1172503 strains on media supplemented with different carbon sources under aerobic conditions after 26 hours.]]
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To ascertain whether glucose, glycerol or acetate make for good substrates under aerobic conditions, eight additional cultures were inoculated with KRX and KRX-oprF (XXXNAME). For these cultures, only an end-point determination was carried out. The results can be seen in figure 2. They indicate that acetate is, as expected, not a suitable substrate. Growth is best with glucose as a substrate, but glycerol yields satisfactory results as well.<br>
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To ascertain whether glucose, glycerol or acetate make for good substrates under aerobic conditions, eight additional cultures were inoculated with both strains. For these cultures, only an end-point determination was carried out. The results can be seen in figure 2. They indicate that acetate is, as expected, not a suitable substrate. Growth is best with glucose as a substrate, but glycerol yields satisfactory results as well.<br>
The data acquired points to glycerol being the most suitable substrate. To make sure glycerol can also be used for respiration with terminal electron acceptors other then oxygen, bacteria were cultivated under anaerobic conditions in M9 medium containing glycerol as a carbon source and potassium nitrate as a soluble electron acceptor.
The data acquired points to glycerol being the most suitable substrate. To make sure glycerol can also be used for respiration with terminal electron acceptors other then oxygen, bacteria were cultivated under anaerobic conditions in M9 medium containing glycerol as a carbon source and potassium nitrate as a soluble electron acceptor.
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[[File:IGEM_Bielefeld2013_Growthmfcmedia3.jpg|500px|left|thumb|'''Figure 1:''' Growth of ''E. coli'' KRX and ''E. coli'' KRX BBa_K1172503 strains on media supplemented with different carbon sources under anaerobic conditions.]]
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[[File:IGEM_Bielefeld2013_Growthmfcmedia3.jpg|500px|left|thumb|'''Figure 3:''' Growth of ''E. coli'' KRX and ''E. coli'' KRX BBa_K1172503 strains on media supplemented with glycerol under aerobic condition. Graphs marked KNO3 were supplemented with potassium nitrate.]]
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The results of this experiment are shown in figure 3. Cultures which were supplemented with KNO<sub>3</sub> grow significantly faster than those that weren’t, indicating that potassium nitrate is indeed used as a terminal electron acceptor for anaerobic respiration.<br><br>
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Based on these results, M9 medium with 5.1 g of glycerol per liter is used for all future experiments with the fuel cell.
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==Exogenous Mediators==
==Exogenous Mediators==

Revision as of 14:11, 4 October 2013



Microbial Fuel Cell


Basic Principle of a Microbial Fuel Cell

A microbial fuel cell (MFC) can be utilized for power generation through the conversion of organic substrates by microorganisms. The fuel cell generally consists of two separate units, the anode and cathode compartment. Both compartments are separated by a proton exchange membrane (PEM). Microorganisms acting as biocatalysts release electrons during metabolic reactions and transfer them to the anode of the fuel cell. The simultaneously generated protons are transferred through the PEM directly to the cathode compartment, while the electrons have to pass through an external load circuit. These electrons reduce an electron acceptor on the cathode side. Both anaerobic and aerobic electron acceptors may be used. Optimization of electron transfer is an important parameter for the effective use of an MFC. Generally, electrons can be transferred to the anode either by direct contact or through mediators.


Figure 1: An overview of our project with the different subprojects.







Theory

Construction

Media and carbon sources

As explained previously (XXXLINKHIER), E. coli have to respire under aerobic conditions in order for the microbial fuel cell to work. This can prove to be problematic when using media such as LB, because in the absence of oxygen the bacteria might use the available carbon source for fermentation. To prevent this, the different strains which were tested in the fuel cell were cultivated in M9 minimal medium. After consulting about the fermentation problem with Dr. Falk Harnisch, we decided to supplement the M9 medium with different carbon sources to test how this affects bacterial growth under anaerobic conditions. The goal of this experiment was to find a carbon source which is well suited for aerobic respiration, but can’t be used for fermentation by the bacteria.
Tests were carried out with glucose, glycerol and acetate. The amount of substrate supplemented into the medium was adjusted, so that the amount of carbon atoms was the same for each culture. The concentrations were 5.0 g/L for glucose, 5.1 g/L for glycerol and 6.8 g/L for acetate. In all cultivation experiments, two biological replica of every strain and substrate combination were prepared and each sample was diluted and measured twice. Anaerobic cultivations were conducted in 30 mL test tubes with rubber lids. Samples were taken by piercing the lid with a syringe. For aerobic cultivations, shaker flasks were used. The strains tested were the KRX wild-type and the KRX oprF T7 ([http://parts.igem.org/wiki/index.php?title=Part:BBa_K1172502 BBa_K1172502]) strain. The latter overexpresses large porin-proteins when induced with rhamnose. Induction was carried out with XXX mL of a XXX g/L rhamnose solution 1 hour after inoculation. All cultures were inoculated with an optical density of 0.22. Temperature was kept at 37°C during cultivation.


Figure 1: Growth of E. coli KRX and E. coli KRX BBa_K1172503 strains on media supplemented with different carbon sources under anaerobic conditions.

















Figure 1 shows that, under anaerobic conditions, both strains grow well on glucose but seem to be unable to use acetate or glycerol efficiently.


Figure 2: Growth of E. coli KRX and E. coli KRX BBa_K1172503 strains on media supplemented with different carbon sources under aerobic conditions after 26 hours.



















To ascertain whether glucose, glycerol or acetate make for good substrates under aerobic conditions, eight additional cultures were inoculated with both strains. For these cultures, only an end-point determination was carried out. The results can be seen in figure 2. They indicate that acetate is, as expected, not a suitable substrate. Growth is best with glucose as a substrate, but glycerol yields satisfactory results as well.
The data acquired points to glycerol being the most suitable substrate. To make sure glycerol can also be used for respiration with terminal electron acceptors other then oxygen, bacteria were cultivated under anaerobic conditions in M9 medium containing glycerol as a carbon source and potassium nitrate as a soluble electron acceptor.


Figure 3: Growth of E. coli KRX and E. coli KRX BBa_K1172503 strains on media supplemented with glycerol under aerobic condition. Graphs marked KNO3 were supplemented with potassium nitrate.


















The results of this experiment are shown in figure 3. Cultures which were supplemented with KNO3 grow significantly faster than those that weren’t, indicating that potassium nitrate is indeed used as a terminal electron acceptor for anaerobic respiration.

Based on these results, M9 medium with 5.1 g of glycerol per liter is used for all future experiments with the fuel cell.

Exogenous Mediators

Cultivation

Results

References







Contents