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Team:KU Leuven/Project/Ecological/wetlab
From 2013.igem.org
Secret garden
Congratulations! You've found our secret garden! Follow the instructions below and win a great prize at the World jamboree!
- A video shows that two of our team members are having great fun at our favourite company. Do you know the name of the second member that appears in the video?
- For one of our models we had to do very extensive computations. To prevent our own computers from overheating and to keep the temperature in our iGEM room at a normal level, we used a supercomputer. Which centre maintains this supercomputer? (Dutch abbreviation)
- We organised a symposium with a debate, some seminars and 2 iGEM project presentations. An iGEM team came all the way from the Netherlands to present their project. What is the name of their city?
Now put all of these in this URL:https://2013.igem.org/Team:KU_Leuven/(firstname)(abbreviation)(city), (loose the brackets and put everything in lowercase) and follow the very last instruction to get your special jamboree prize!
Insect & Plant Experiments
In order to validate the BanAphids' model, we decided to investigate the effect of the two substances, E-beta-farnesene (EBF) and Methyl Salicylate (MeS) on aphids. Once we started our project, we noticed that we were not the only ones approaching this agricultural problem from this angle. Research groups like Rothamsted are currently investigating the use of EBF to repel aphids as well but in the form of GM crops. We also found that other areas of the industry were also interested in our project such as Biobest, worldwide leader in sustainable crop protection and pcfruit whose mission is to research prospects for biological fruit growing, new crop protection methods, etc. We were invited to perform our insect experiments at Biobest and pcfruit to validate the BanAphids model. We attempted to determine the working concentrations of our two substances in pure form and to examine the preference of aphids and their predators under different conditions and environments. With the data we have collected so far, we can observe that these two substances indeed do have an effect on aphids.
What we wanted the insects to do!
Through many years of research, it has been found that E-beta-farnesene (EBF) is the essential compound of an aphid's alarm pheromone and that the general response to this signal is a change in gene expression that will agitate the aphids causing them to leave the plant. We tried to prove this using the synthetic compound EBF (Sigma-Aldrich, farnesene, mixture of isomers). EBF also works as an insect attractant. We also tried to prove the kairomone effect of Methyl Salicylate (Sigma-Aldrich, Methyl Salicylate ≥99%) through the use of the synthetic compound. We experimented with three different set-ups to try and determine a range working concentrations of MeS and EBF on the insects. A description of the natural enemies, ladybugs (adult and larvae), green lacewings (larvae) and parasitic wasps (adult), and aphids we received from biobest and employed in our experiments is given here.
One of the set-ups we used.
Second set-up, with wind tunnel
Y-tube olfactometer set-up
Natural Enemies
1. The predatory insects were subjected to a choice experiment. Starting from a determined point on our set-up (see video), the insects were released and given a choice between one of the five MeS concentrations and a control solution which was the solvent used (in this case ethanol). The insects were given 1-3 mins to make a choice. After our first day at Biobest we had very disappointing results, there was no clear reaction to be seen to either the MeS or the control solution. This set-up was performed under a fume hood and this might have resulted in the rapid elimination of MeS.
2. With advice from Biobest we tried some troubleshooting, we diluted MeS and EBF in other solvents, in particular, hexane and paraffin oil. We chose to use paraffin oil because MeS is a volatile and paraffin oil would allow the slow release of this volatile, giving the insects more time to respond to MeS. Under the advice from Prof. Felix Wäckers and dr. Veerle Mommaerts, we also tried to prime the insects first. Practically, priming the insects means that we let a few predator/parasitoid insects loose on a washed aphid-infested leaf. The insects that showed interest in the leaf, this means that the insect was walking around in search of aphids, were further used in the behavioural experiments. We also tried a different set-up, with a fan, mimicking a wind tunnel, that blows in the direction of the insects so that the MeS fumes are blown toward the insect. In these set of experiments we used an aphid infested leaf as a control compared to response to this leaf after introduction of one of the five MeS or EBF concentrations. This however did not demonstrate any clear behaviour form the insects other than random movement. We contemplated yet again which parameters we could change, we thought that the insects were maybe more interested in their new 'strange' environment, the set-up, than the substances but other than changing the set-up, the concentrations we used and the solvent, we didn't see many other variables that could have affected our results.
3. After talking to Tim Belien of pcfruit, he offered us their Y-tube olfactometer and their lab. We compared again all the five MeS concentrations with the control in a Y-tube olfactometer. The lady bug adults were first released into the Y-tube to become habituated with the set-up, before being exposed to MeS or EBF. We could see an obvious attraction of three ladybugs in a row at a MeS concentration of 10-10. But after changing the side of the Y-tube in which MeS was released, we could not see the attraction anymore. We think that the Y-tube olfactometer was not clean enough and that there was still some MeS on the other tube as well. We saw repulsion of all ladybugs at a MeS concentration of 10-7, demonstrating the upper limit of MeS concentrations. These experiments gave us an indication of the working MeS concentrations.
What we expected the plants to do!
The effects of EBF on aphids are described thoroughly in different articles, in contrary to their responses to MeS. MeS is a critical signal molecule in inducing plant defence mechanisms and therefore it should have a negative effect on the aphids. According to the optimal defence theory, a plant will protect its most valuable parts when under attack, for instance, their reproductive parts and terminal leaves. We therefore expected to see a redistribution of the aphids to the lower leaves after induction with MeS. A plant has different defence pathways depending on the site of infection, the roots or the leaves, we therefore used two different induction methods. We induced the plants with five different concentrations of MeS through the roots with water and via spraying with EtOH on the leaves. If you would like to find out how to practically induce a plant, please look at our protocol. 48h (day 2) post-MeS induction, 15 of the smallest aphids were placed on the head of the plant so that the following generation would be the F1 generation and the plants were placed individually in nets. The distribution and total number of aphids were examined on day 7 and day 10 post-MeS induction.
Aphid preference - total number - root induction
On day 7 and 10, we examined the total amount of aphids on the plants and found that all the plants still had around 15 aphids. We see that replication has not occurred yet amongst the control plants or the MeS induced plant. This means that so far, the induced plants have no effect (yet) on the aphid population when it comes to their reproductive capacity.
MeS induction via the roots on Day 7
MeS induction via the roots on Day 10
One of the set-ups we used.
Aphid preference - total number - leaf induction
1. The predatory insects were subjected to a choice experiment. Starting from a determined point on our set-up (see video), the insects were released and given a choice between one of the five MeS concentrations and a control solution which was the solvent used (in this case ethanol).
