"
Team:HokkaidoU Japan/Notebook/Promoter oripro(K1084007)-B0034-lacZ-B0015
From 2013.igem.org
(Difference between revisions)
(Created page with "{{Team:HokkaidoU_Japan/header_Maestro}} <html> <div id="common-header-bottom-background"> <div class="wrapper"> <h1 id="common-header-title">Maestro E.coli</h1> ...") |
|||
| Line 12: | Line 12: | ||
<div id="hokkaidou-contents"> | <div id="hokkaidou-contents"> | ||
<!-- end header / begin contents --> | <!-- end header / begin contents --> | ||
| - | + | <div class="workflow-container"> | |
| + | <ul class="steps"> | ||
| + | <li class="step start"> | ||
| + | <div class="step-tile"><h2>Start</h2></div> | ||
| + | </li> | ||
<li class="step"> <div class="step-tile"> <h2 class="step-title">Annealing two primers to synthesize oripro(K1084007)</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Sun Feb 24</time> </li> </ul> <div class="step-recipe"> Anneal ut-tg-oripro(K1084007)-f and ut-tg-oripro(K1084007)-r </div> </div> </div> </li> | <li class="step"> <div class="step-tile"> <h2 class="step-title">Annealing two primers to synthesize oripro(K1084007)</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Sun Feb 24</time> </li> </ul> <div class="step-recipe"> Anneal ut-tg-oripro(K1084007)-f and ut-tg-oripro(K1084007)-r </div> </div> </div> </li> | ||
<li class="step"> <div class="step-tile"> <h2 class="step-title">Culture</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Mon Feb 25</time> </li> </ul> <div class="step-recipe"> pSB1C3 </div> </div> </div> </li> | <li class="step"> <div class="step-tile"> <h2 class="step-title">Culture</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Mon Feb 25</time> </li> </ul> <div class="step-recipe"> pSB1C3 </div> </div> </div> </li> | ||
| Line 50: | Line 54: | ||
<li class="step"> <div class="step-tile"> <h2 class="step-title">Culture for β-galactosidase assay</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Tue Mar 19</time> </li> </ul> <div class="step-recipe"> K1084007-B0034-lacZα-B0015 on pSB1AK3<br> R0040-B0034-lacZα-B0015 on pSB1A2<br> NC:K1084007 on pSB1C3 </div> </div> </div> </li> | <li class="step"> <div class="step-tile"> <h2 class="step-title">Culture for β-galactosidase assay</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Tue Mar 19</time> </li> </ul> <div class="step-recipe"> K1084007-B0034-lacZα-B0015 on pSB1AK3<br> R0040-B0034-lacZα-B0015 on pSB1A2<br> NC:K1084007 on pSB1C3 </div> </div> </div> </li> | ||
<li class="step"> <div class="step-tile"> <h2 class="step-title">β-galactosidase assay</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Wed Mar 20</time> </li> </ul> <div class="step-recipe"> K1084007-B0034-lacZα-B0015 on pSB1AK3<br> R0040-B0034-lacZα-B0015 on pSB1A2<br> NC:K1084007 on pSB1C3 </div> </div> </div> </li> | <li class="step"> <div class="step-tile"> <h2 class="step-title">β-galactosidase assay</h2> </div> <div class="step-detail"> <div class="step-detail-body"> <ul class="step-detail-trials"> <li> <time>Wed Mar 20</time> </li> </ul> <div class="step-recipe"> K1084007-B0034-lacZα-B0015 on pSB1AK3<br> R0040-B0034-lacZα-B0015 on pSB1A2<br> NC:K1084007 on pSB1C3 </div> </div> </div> </li> | ||
| + | |||
| + | <li class="step complete"> | ||
| + | <div class="step-tile"><h2>Complete!</h2></div> | ||
| + | </li> | ||
| + | </ul> | ||
| + | </div> | ||
| + | |||
<!-- end contents / begin footer --> | <!-- end contents / begin footer --> | ||
</div> | </div> | ||
Revision as of 06:10, 27 September 2013
Maestro E.coli
Notebook
-
Start
-
Annealing two primers to synthesize oripro(K1084007)
Anneal ut-tg-oripro(K1084007)-f and ut-tg-oripro(K1084007)-r -
Culture
pSB1C3 -
EtOH precipitation
K1084007 -
Culture
I732020 -
Mini-prep
pSB1C3, I732020 -
PCR & Gel extraction
I732020
100b up, 200b dn, KOD plus NEO -
Digestion & Gel extraction
Cut pSB1C3 with EcoRI, SpeI (using 10xH buffer) -
EtOH precipitation
pSB1C3 -
Ligation
Ligate pSB1C3 with K1084007 -
Transformation
K1084007 on pSB1C3
5µL DNA to DH5α -
Colony PCR
K1084007 on pSB1C3 -
Mini-prep
K1084007 on pSB1C3 -
PCR for Sequencing
I1084007
100b up, 200b dn -
EtOH for Sequencing
I1084007 -
Sequencing
K1084007 -
Digestion & Gel extraction
Cut I732020 with SpeI, XbaI (using 10xM buffer)
Cut R0040 with SpeI, PstI (using 10xH buffer)
Cut I732020(PCR product) with XbaI, PstI (using 10xM buffer) -
EtOH precipitation
I732020, R0040, I732020(PCR product) -
Ligation(over night)
Ligate K1084007 with I732020
Ligate R0040 with I732020(PCR product) -
Transformation
K1084007-B0034-LacZα-B0015 on pSB1AK3
5µL DNA to DH5%alpha;
R0040-B0034-LacZα-B0015 on pSB1A2
5µL DNA to DH5%alpha; -
Colony PCR
Èñ©±€æ -
Mini-prep
K1084007-B0034-LacZα-B0015 on pSB1AK3
R0040-B0034-LacZα-B0015 on pSB1A2 -
Culture
K1084007-B0034-LacZα-B0015 on pSB1AK3
R0040-B0034-LacZα-B0015 on pSB1A2
(Add X-Gal to confirm β-galactosidase activity)
X-Gal 50 mg
dimethylformamid 1 mL
(50 mg/mL)
Diluted the X-gal stock 1 to 1 with DW
Pipetted 50 uL of this dilution onto the plate
Evenly distributed the solution onto the plate using a spreader
Dried for 30 min at 37C
Streaked these colonies as "single colony isolation" on each LBA plate -
PCR for Sequencing
K1084007, K1084007-B0034-lacZα-B0015
100b up, 200b dn -
EtOH for Sequencing
K1084007, K1084007-B0034-lacZα-B0015 -
Sequencing
K1084007, K1084007-B0034-lacZα-B0015 -
Culture for β-galactosidase assay
K1084007-B0034-lacZα-B0015 on pSB1AK3
R0040-B0034-lacZα-B0015 on pSB1A2
NC:K1084007 on pSB1C3 -
β-galactosidase assay
K1084007-B0034-lacZα-B0015 on pSB1AK3
R0040-B0034-lacZα-B0015 on pSB1A2 -
Digestion & Gel extraction
Cut I732020 with EcoRI, XbaI (using 10xM buffer)
Cut K184007 with EcoRI, SpeI (using 10xH buffer) -
EtOH precipitation
I732020, K1084007 -
Culture
R0040-B0034-mcherry-B0015 on pSB1A2
K1084007 on pSB1C3 -
Mini-prep
R0040-B0034-mcherry-B0015 on pSB1A2
K1084007 on pSB1C3 -
Digestion & Gel extraction
Cut K1084007- B0034-lacZα-B0015 with XbaI, PstI (using 10xM buffer)
Cut K1084007 with XbaI, PstI (using 10xM buffer)
Cut R0040 with XbaI, PstI (using 10xM buffer) -
EtOH precipitation
K1084007-B0034-lacZα-B0015
K1084007
R0040-B0034-mcherry-B0015 -
Ligation
Ligate K1084007-B0034-lacZα-B0015 with pSB1A2
Ligate K1084007-B0034-lacZα-B0015 with pSB1C3 -
Transformation
K1084007-B0034-lacZα-B0015 on pSB1A2
K1084007-B0034-lacZα-B0015 on pSB1C3
5µL DNA to DH5α -
Culture for β-galactosidase assay
K1084007-B0034-lacZα-B0015 on pSB1AK3
R0040-B0034-lacZα-B0015 on pSB1A2
NC:K1084007 on pSB1C3 -
β-galactosidase assay
K1084007-B0034-lacZα-B0015 on pSB1AK3
R0040-B0034-lacZα-B0015 on pSB1A2
NC:K1084007 on pSB1C3 -
Complete!
