"
Team:BYU Provo/Notebook/SmallPhage/Springexp
From 2013.igem.org
(Difference between revisions)
| (29 intermediate revisions not shown) | |||
| Line 4: | Line 4: | ||
{| width="100%" | {| width="100%" | ||
| - | | colspan="3" | <font color="#333399" size="5" font face=" | + | | colspan="3" | <font color="#333399" size="5" font face="Calibri"> |
| + | |||
| + | : '''Small Phage May - June Notebook'''</font> | ||
| + | <br> | ||
<br> | <br> | ||
| - | |- | + | |- valign="top" |
| style="width: 18%; background-color: transparent;"| | | style="width: 18%; background-color: transparent;"| | ||
| - | + | <font color="#333399" size="3" font face="Calibri"> | |
| - | + | <font size = "4"> | |
| - | + | : <u> '''Small Phage''' </u> </font> | |
| - | + | : [[Team:BYU Provo/Notebook/SmallPhage/Winterexp|March-April]] | |
| - | + | : [[Team:BYU Provo/Notebook/SmallPhage/Springexp|May-June]] | |
| + | |||
| + | : [[Team:BYU Provo/Notebook/SmallPhage/Summerexp|July-August]] | ||
| + | |||
| + | : [[Team:BYU Provo/Notebook/SmallPhage/Fallexp|September-October]] | ||
| + | |||
| + | </font> | ||
| style="width: 50%; background-color: transparent;"| | | style="width: 50%; background-color: transparent;"| | ||
| - | <font | + | <font size="5" font face="Calibri"> '''May 1 - May 12''' </font> |
| - | + | <br> | |
| - | : | + | <font size="3" font face="Calibri"> This is the start of Spring Term at BYU! The weather is finally getting better: no more snowing. And we are ready to do some serious lab work! While we are waiting for our mutgen, 5-bromodeoxyuridine, to arrive, we decided to start this term with establishing the basic procedures for our direct evolution method. Specifically, this involves making sure that we can (1) grow and amplify T7 phage in liquid culture, (2) select for smaller phage using concentrated top agar, and (3) amplify phage from a single plaque. During these two weeks, we also designed primers for cloning and sequencing T7 capsid proteins as well as mapped out detailed procedures for both cloning T7 capsid proteins and applying mutagen. </font> |
| - | + | <br> | |
| - | + | <font color="#333399" size="4" font face="Calibri"> | |
| - | + | [[Team:BYU_Provo/Notebook/SmallPhage/Springexp/Period1/Dailylog|Daily log]] | |
| - | : | + | [[Team:BYU_Provo/Notebook/SmallPhage/Springexp/Period1/Explist|Experiment Listing]] |
| - | | style="width: 20%; background-color: transparent;"| [[File:Spring1.JPG| | + | [[Team:BYU_Provo/Notebook/SmallPhage/Springexp/Period1/PR| Progress Report]] </font> |
| + | |||
| + | <br> | ||
| + | |||
| + | | style="width: 20%; background-color: transparent;"| [[File:Spring1.JPG|220px|center]] | ||
| Line 44: | Line 57: | ||
| style="width: 18%; background-color: transparent;"| | | style="width: 18%; background-color: transparent;"| | ||
| - | | '''May 13 - May 26''' | + | | <font size="5" font face="Calibri"> '''May 13 - May 26''' </font> |
| - | + | <br> | |
| - | + | <font size="3" font face="Calibri"> In these two weeks, we performed our first round of mutagenesis and first PCR. Although we are still testing the results to optimize our protocol, we are optimistic about the outcome!</font> | |
| - | + | <br> | |
| - | + | <font color="#333399" size="4" font face="Calibri"> | |
| - | | style="width: 20%; background-color: transparent;"| [[File:Spring2.JPG| | + | [[Team:BYU_Provo/Notebook/SmallPhage/Springexp/Period2/Dailylog|Daily log]] |
| + | |||
| + | [[Team:BYU_Provo/Notebook/SmallPhage/Springexp/Period2/Explist|Experiment Listing]] | ||
| + | |||
| + | [[Team:BYU_Provo/Notebook/SmallPhage/Springexp/Period2/PR| Progress Report]] </font> | ||
| + | |||
| + | <br> | ||
| + | |||
| + | |||
| + | | style="width: 20%; background-color: transparent;"| [[File:Spring2.JPG|220px|center]] | ||
| Line 61: | Line 83: | ||
| style="width: 18%; background-color: transparent;"| | | style="width: 18%; background-color: transparent;"| | ||
| - | | '''May 27 - June | + | | <font size="5" font face="Calibri"> '''May 27 - June 16''' </font> |
| - | + | <br> | |
| - | + | <font size="3" font face="Calibri"> We discovered that our first round of mutagenesis didn't work properly so we adjusted it slightly and performed a second round. We also sequenced the T7 capsid protein. </font> | |
| - | : | + | <br> |
| + | |||
| + | <font color="#333399" size="4" font face="Calibri"> | ||
| + | |||
| + | [[Team:BYU_Provo/Notebook/SmallPhage/Springexp/Period3/Dailylog|Daily log]] | ||
| + | |||
| + | [[Team:BYU_Provo/Notebook/SmallPhage/Springexp/Period3/Explist|Experiment Listing]] | ||
| + | |||
| + | </font> | ||
| + | |||
| + | <br> | ||
| - | |||
| - | | style="width: 20%; background-color: transparent;"| [[File: | + | | style="width: 20%; background-color: transparent;"| [[File:SmallPhageSpring3.JPG|220px|center]] |
| Line 78: | Line 109: | ||
| style="width: 18%; background-color: transparent;"| | | style="width: 18%; background-color: transparent;"| | ||
| - | | '''June | + | | <font size="5" font face="Calibri"> '''June 17 - June 30''' </font> |
| - | + | <br> | |
| - | + | <font size="3" font face="Calibri"> We completed our second round of mutagenesis, but to no avail. There was no evidence of mutation so we started a third round of mutagenesis by altering our protocol a little bit. </font> | |
| - | : | + | <br> |
| + | |||
| + | <font color="#333399" size="4" font face="Calibri"> | ||
| + | |||
| + | [[Team:BYU_Provo/Notebook/SmallPhage/Springexp/Period4/Dailylog|Daily log]] | ||
| + | |||
| + | [[Team:BYU_Provo/Notebook/SmallPhage/Springexp/Period4/Explist|Experiment Listing]] | ||
| + | |||
| + | </font> | ||
| + | |||
| + | <br> | ||
| - | |||
| - | | style="width: 20%; background-color: transparent;"| [[File:Spring4.JPG| | + | | style="width: 20%; background-color: transparent;"| [[File:Spring4.JPG|220px|center]] |
Latest revision as of 02:52, 28 September 2013
| ||
|
|
May 1 - May 12
This is the start of Spring Term at BYU! The weather is finally getting better: no more snowing. And we are ready to do some serious lab work! While we are waiting for our mutgen, 5-bromodeoxyuridine, to arrive, we decided to start this term with establishing the basic procedures for our direct evolution method. Specifically, this involves making sure that we can (1) grow and amplify T7 phage in liquid culture, (2) select for smaller phage using concentrated top agar, and (3) amplify phage from a single plaque. During these two weeks, we also designed primers for cloning and sequencing T7 capsid proteins as well as mapped out detailed procedures for both cloning T7 capsid proteins and applying mutagen.
| 
|
| May 13 - May 26
In these two weeks, we performed our first round of mutagenesis and first PCR. Although we are still testing the results to optimize our protocol, we are optimistic about the outcome!
| 
| |
| May 27 - June 16
We discovered that our first round of mutagenesis didn't work properly so we adjusted it slightly and performed a second round. We also sequenced the T7 capsid protein.
| 
| |
| June 17 - June 30
We completed our second round of mutagenesis, but to no avail. There was no evidence of mutation so we started a third round of mutagenesis by altering our protocol a little bit.
| 
| |
