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Up until now we succeded
• Producing Nanoparticles and loading them
• Clone a pH sensitive promoter
• Engineer a fusion protein between ice nucleation protein and streptavidin
But we didn't have enough time to characterize completely and assemble the parts to form the Taxi.Coli.
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What we would have done with more time:
Nanoparticles
• Digestion assay first with commercial MMP2/trypsin then measurement wiht fluorescent release assay using a plate reader (was tested, but we didn't received an important primer in time.
• Eventually try to load the nanoparticles with an actual drug
Cell surface display of Streptavidin
• Cloned a plasmid that encodes a fusion protein INP-Streptavidin-YFP and one INP-YFP-Streptavidin. Then we would have been able to use the exact same protocol we used to characterize the Biobrick BBa_K523013, to proof surface localization.
• Cloned a plasmid that encodes a fusion protein of INP with for example protein A to check if the
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Sensing/Effector
• Make more plate reader experiments, with more different pHs and differnt Buffers
• Transform other E.coli K12 (MG1655), because the promoter originate from this strain, so maybe the needed xxxy aren't present in the DHalpha strain we use at the moment
• Start new cloning, with slight variations of the sequence
• Redo the purification of the Gelatinase E and of Matrixmetalloprotease2 (MMP2)
• Repeat the Cloning strategy with new primers, because those promoters added a stop codon directly after the enzyme, and before the GFP, so to repeat the cloning, would make the visualization much more easier.
• Clone the sensing promoter together with the enzyme to make the plasmid that induces enzyme production upon a signal.
Taxi.Coli
• Cloned one of our Biobricks in a backbone that contains another resistance than chloramphenicol to cotransfect bacteria with the Plasmids responsible for Sensing/Effector and the Plasmid used to connect the Nanoparticles.
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