Team:Baskent Meds/Project

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<li><a href="/Team:Baskent_Meds/Lpdetect" title="Project Description">Legionella detection</a></li>
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     <p align="left"><strong>Prof. Dr. Feride iffet &#350;ahin </strong></p>
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     <p class="style8" align="left"><strong>Transformation of Escherichia coli In Order To Develop Legionella pneumophila Sensing Bacteria</strong></p><br>
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    <p align="left"><strong> Department of Medical Genetics, Faculty of Medicine, </strong><strong>Baskent University, Ankara, Turkey </strong></p>
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    <p align="left"><strong>Curriculum Vitae </strong></p>
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<p>In order to reduce the infection risk, detection of environmental source and reduction of microbial load are required. Hyperchlorination of water source and permanence of height water temperature provides mid-grade success. Besides, total eradication of Legionella pneumophila from water sources is quite difficult. Since organism’s potential of infection in closed water storage areas is low, reducing the number of organisms in water source would be a sufficient precaution for control. Our recombinant bacteria are able to respond to biological load of Legionella pneumophila so, increase in number of Legionella cells leads to increased secretion of anti-legionella peptide, and that plays an important role in controlling Legionella numbers in water source.
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    <p> Prof. Dr. Feride iffet &#350;ahin had her M.D. degree from Faculty of Medicine, Istanbul University. She holds her Ph.D. degree in Medical Biology and Genetics from Gazi University Department of Medical Biology and Genetics. She continued her studies at the Department of Medical Oncology, St.Bartholomew&rsquo;s Hospital, Imperial Cancer Research Fund, London as a visiting scientist. She worked as an assistant professor at the Department of Medical Biology and Genetics, Gazi University till 2002. She received her associate professorship degree in 2000. In 2002, she began her work in the Department of Medical Biology and Genetics as the Head of the Department, Ba&#351;kent University, and in 2004 she became the Head of the Department of Medical Genetics. She held her professorship in 2007. She continues her work as the Head of Department of Medical Genetics, and Department of Medical Biology. </p>
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    <p> Her main research interests are hematological malignancies and solid tumors. In particular, her recent projects are focused on determination of molecular mechanisms of genetic and sporadic pathologies by integrating new technologies such as microarray technology. Moreover, she is the principal investigator of many projects of the Institute of Transplantation and Gene Sciences which are mainly focused on agricultural biochemistry and biotechnology, genotoxicological studies in agriculture, and anticarcinogenic, antioxidant and antibacterial properties of extracts of endemic plant species. Her technical background covers many basic and new methodologies in molecular genetics, cytogenetics, and animal cell culture. </p>
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Legionella pneumophila cannot be cultured using conventional media, it needs mediums with cysteine and iron. Application of standard culture techniques and detection of bacteria from samples can last up to 10 days. Even identification at genus level is done on media, identification at species level is troubled and samples are generally sent to reference laboratories for this step. When detection with simultaneous quantitative polymerase chain reaction is considered, both method itself reduces required time and identification time is shortened by usage of commercial kits. However, in order this method to give accurate quantitative results at adequate titration, sensitive standardizations must be done for different types of environmental samples. This test is needed to be done in standardized reference laboratories and cost per sample is high. With our quorum sensing based system, presence of low bacterial load can be detected at species level.
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    <p> S he has published over 100 research and review articles in national and international peer-reviewed journals, and wrote 7 book chapters, presented over 120 studies in international and national congresses, and took many awards and scholarships for her studies. Her articles have been cited several times by many reports published in peer-reviewed journals
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In conclusion, detection and prevention of colonization of Legionella pneumophila are substantially costly and requires long processes. Our biological system can both provide detection and prevent colonization that occurred via high bacterial load with a considerably low cost. Since is works with natural biological expression process, the system can react to environmental alterations in a small amount of time. As the system can settle itself on colonization surfaces, it is easy to use after the first inoculation. The system does not constitute any risks in means of biosafety because Escherichia coli strains which are noninfectious, present in environment and has low virulence are manipulated and developed</p>
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<p><strong>Our Sponsors</strong></p>
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<a href="http://www.baskent.edu.tr" title="Başkent Üniversitesi"><img src="https://static.igem.org/mediawiki/2013/3/30/Baskentlogo.gif" width="100" height="90" ></a><a href = "http://www.tubitak.gov.tr" title="TÜBİTAK"><img src="https://static.igem.org/mediawiki/2013/b/bf/Tubitaklogo.jpg" width="100" height="90"></a><a href = "http://www.home.agilent.com/agilent/home.jspx?lc=eng&cc=TR" title="Agilent Türkiye"><img src="https://static.igem.org/mediawiki/2013/c/c3/Aglientsmszw.png" width="100" height="90"></a>
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Latest revision as of 18:23, 4 October 2013

Baskent_Meds IGEMwiki



Transformation of Escherichia coli In Order To Develop Legionella pneumophila Sensing Bacteria


In order to reduce the infection risk, detection of environmental source and reduction of microbial load are required. Hyperchlorination of water source and permanence of height water temperature provides mid-grade success. Besides, total eradication of Legionella pneumophila from water sources is quite difficult. Since organism’s potential of infection in closed water storage areas is low, reducing the number of organisms in water source would be a sufficient precaution for control. Our recombinant bacteria are able to respond to biological load of Legionella pneumophila so, increase in number of Legionella cells leads to increased secretion of anti-legionella peptide, and that plays an important role in controlling Legionella numbers in water source.
Legionella pneumophila cannot be cultured using conventional media, it needs mediums with cysteine and iron. Application of standard culture techniques and detection of bacteria from samples can last up to 10 days. Even identification at genus level is done on media, identification at species level is troubled and samples are generally sent to reference laboratories for this step. When detection with simultaneous quantitative polymerase chain reaction is considered, both method itself reduces required time and identification time is shortened by usage of commercial kits. However, in order this method to give accurate quantitative results at adequate titration, sensitive standardizations must be done for different types of environmental samples. This test is needed to be done in standardized reference laboratories and cost per sample is high. With our quorum sensing based system, presence of low bacterial load can be detected at species level.
In conclusion, detection and prevention of colonization of Legionella pneumophila are substantially costly and requires long processes. Our biological system can both provide detection and prevent colonization that occurred via high bacterial load with a considerably low cost. Since is works with natural biological expression process, the system can react to environmental alterations in a small amount of time. As the system can settle itself on colonization surfaces, it is easy to use after the first inoculation. The system does not constitute any risks in means of biosafety because Escherichia coli strains which are noninfectious, present in environment and has low virulence are manipulated and developed




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