Team:TU Darmstadt/labbook/DetectionConstruct
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+ | <a href="https://2013.igem.org/Team:TU_Darmstadt/labbook"> | ||
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+ | <font size="8" color="#F0F8FF" face="Arial regular">Materials |</font> | ||
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<h2><font size="6" color="#F0F8FF" face="Arial regular">Construction of the Detection Construct</font></h2> | <h2><font size="6" color="#F0F8FF" face="Arial regular">Construction of the Detection Construct</font></h2> | ||
- | < | + | <br><br> |
- | < | + | <font size="3" color="#F0F8FF" face="Arial regular"> |
+ | <p text-aligne:left style="margin-left:50px; margin-right:50px"> | ||
- | + | The detection construct contains both fusionproteins, tar-LssmOrange and CheB-mKate, which are needed to put the mycotxin mediated FRET system to effect in an bacterial cell. Thus it comprises the following parts. | |
- | + | <center> | |
- | + | <img src="https://static.igem.org/mediawiki/2013/e/ef/Darmstadt13_labbook_detec_Psb1c3_detection.png" width="450" aligne="center" alt=""> | |
- | + | <br><br> | |
- | + | </center> | |
+ | <h2><font size="6" color="#F0F8FF" face="Arial regular">Traditional cloning approach</font></h2> | ||
+ | <br> | ||
- | === | + | <font size="3" color="#F0F8FF" face="Arial regular"> |
+ | <p text-aligne:left style="margin-left:50px; margin-right:50px"> | ||
- | + | <br> | |
- | was | + | We worked on this approach from the 10th of may till the 10th of june. It was abandoned due to major difficulties during restriction, ligation and transformation. |
- | === | + | <h2><font size="6" color="#F0F8FF" face="Arial regular">gBLOCK approach</font></h2> |
- | was | + | <br> |
+ | <font size="3" color="#F0F8FF" face="Arial regular"> | ||
+ | <p text-aligne:left style="margin-left:50px; margin-right:50px"> | ||
+ | <br> | ||
+ | |||
+ | We worked on this approach from the 11th of june till the 12th of august. As before it was abandoned due to major difficulties during restriction, ligation and transformation. | ||
+ | |||
+ | <br> | ||
+ | <h2><font size="6" color="#F0F8FF" face="Arial regular">InFusion approach</font></h2> | ||
+ | |||
+ | <br><br> | ||
+ | |||
+ | <font size="3" color="#F0F8FF" face="Arial regular"> | ||
+ | |||
+ | |||
+ | <table border="1" rules="rows" style="margin-left:50px; margin-right:50px"> | ||
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<tr> | <tr> | ||
- | <td>13.08</td> | + | <td >13.08</td> |
<td>gBLOCK assembly of CMK and TLO</td> | <td>gBLOCK assembly of CMK and TLO</td> | ||
<td></td> | <td></td> | ||
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</ul></li> | </ul></li> | ||
</ul></td> | </ul></td> | ||
- | <td><img src="https://static.igem.org/mediawiki/2013/3/39/Darmstadt13_infusion_130824_2_PCR_TLO.png" alt="x"></td> | + | <td><img src="https://static.igem.org/mediawiki/2013/3/39/Darmstadt13_infusion_130824_2_PCR_TLO.png" width="75%" height="75%" alt="x"></td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
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</ul></li> | </ul></li> | ||
</ul></td> | </ul></td> | ||
- | <td><img src="https://static.igem.org/mediawiki/2013/f/ff/Darmstadt_infusion_130829_PCR_TLOamplification.png" alt="x"></td> | + | <td><img src="https://static.igem.org/mediawiki/2013/f/ff/Darmstadt_infusion_130829_PCR_TLOamplification.png" width="75%" height="75%" alt="x"></td> |
</tr> | </tr> | ||
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</table> | </table> | ||
+ | </front> | ||
+ | </p> | ||
</body> | </body> | ||
</html> | </html> |
Latest revision as of 03:04, 5 October 2013
Construction of the Detection Construct
The detection construct contains both fusionproteins, tar-LssmOrange and CheB-mKate, which are needed to put the mycotxin mediated FRET system to effect in an bacterial cell. Thus it comprises the following parts.
Traditional cloning approach
We worked on this approach from the 10th of may till the 10th of june. It was abandoned due to major difficulties during restriction, ligation and transformation.
gBLOCK approach
We worked on this approach from the 11th of june till the 12th of august. As before it was abandoned due to major difficulties during restriction, ligation and transformation.
InFusion approach
13.08 | gBLOCK assembly of CMK and TLO | |
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13.08 | Purification | |
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19.08 | Overlap extension PCR | |
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19.08 | Purification | |
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19.08 | Amplification PCR of pBAD1, terminator and pBAD4 | |
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19.08 | Gradient PCR of the amplification of pBAD1, terminator and pBAD4 | |
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20.08 | Purification of PCR batches pBAD1 (Amplification PCR, 19.08), terminator 55°C (Gradient PCR, 19.08) and pBAD4 55°C (Gradient PCR, 19.08) | |
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21.08 | Amplification PCR of CMK, TLO and pSB1C3 | |
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22.08 | Purification of CMK, TLO and pSB1C3 from preparative gel | |
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23.08 | Amplification of TLO | |
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24.08 | Amplification of TLO | |
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24.08 | Amplification of TLO | |
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25.08 | Amplification of TLO | |
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25.08 | Purification of TLO | |
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25.08 | InFusion | |
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26.08 | Amplification of TLO | |
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26.08 | Purification of TLO | |
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26.08 | Amplification of TLO | |
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27.08 | Amplification of TLO | |
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28.08 | Amplification of TLO | |
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28.08 | Amplification of TLO | |
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29.08 | Purification of TLO | |
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31.08 | InFusion | |
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02.09 | Control of pSB1C3-CMK-TLO clone 1 and 2 using colony PCR and test restriction | |
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03.09 | Control of pSB1C3-CMK-TLO clone 1 and 2 using PCR | |
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03.09 | Induction of pSB1C3-TLO-CMK clones with L-Arabinose | |
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03.09 | Sequencing of pSB1C3-TLO-CMK clones | |
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