User:ChristopherW

From 2013.igem.org

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(→Sample Output)
(→Sample Output)
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|-
|-
|colspan="2"|A (Ala)
|colspan="2"|A (Ala)
-
|4 (7.02%)
+
|colspan="2"|3 (6.12%)
|colspan="2"|R (Arg)
|colspan="2"|R (Arg)
-
|2 (3.51%)
+
|colspan="2"|2 (4.08%)
|colspan="2"|N (Asn)
|colspan="2"|N (Asn)
-
|3 (5.26%)
+
|colspan="2"|2 (4.08%)
|colspan="2"|D (Asp)
|colspan="2"|D (Asp)
-
|4 (7.02%)
+
|colspan="2"|2 (4.08%)
|colspan="2"|C (Cys)
|colspan="2"|C (Cys)
-
|4 (7.02%)
+
|colspan="2"|3 (6.12%)
|-
|-
|colspan="2"|Q (Gln)
|colspan="2"|Q (Gln)
-
|2 (3.51%)
+
|colspan="2"|2 (4.08%)
|colspan="2"|E (Glu)
|colspan="2"|E (Glu)
-
|2 (3.51%)
+
|colspan="2"|2 (4.08%)
|colspan="2"|G (Gly)
|colspan="2"|G (Gly)
-
|4 (7.02%)
+
|colspan="2"|4 (8.16%)
|colspan="2"|H (His)
|colspan="2"|H (His)
-
|3 (5.26%)
+
|colspan="2"|2 (4.08%)
|colspan="2"|I (Ile)
|colspan="2"|I (Ile)
-
|3 (5.26%)
+
|colspan="2"|2 (4.08%)
|-
|-
|colspan="2"|L (Leu)
|colspan="2"|L (Leu)
-
|3 (5.26%)
+
|colspan="2"|2 (4.08%)
|colspan="2"|K (Lys):
|colspan="2"|K (Lys):
-
|3 (5.26%)
+
|colspan="2"|2 (4.08%)
|colspan="2"|M (Met)
|colspan="2"|M (Met)
-
|3 (5.26%)
+
|colspan="2"|2 (4.08%)
|colspan="2"|F (Phe)
|colspan="2"|F (Phe)
-
|1 (1.75%)
+
|colspan="2"|6 (12.24%)
|colspan="2"|P (Pro)
|colspan="2"|P (Pro)
-
|2 (3.51%)
+
|colspan="2"|2 (4.08%)
|-
|-
|colspan="2"|S (Ser)
|colspan="2"|S (Ser)
-
|4 (7.02%)
+
|colspan="2"|2 (4.08%)
|colspan="2"|T (Thr)
|colspan="2"|T (Thr)
-
|1 (1.75%)
+
|colspan="2"|2 (4.08%)
|colspan="2"|W (Trp)
|colspan="2"|W (Trp)
-
|3 (5.26%)
+
|colspan="2"|2 (4.08%)
|colspan="2"|Y (Tyr)
|colspan="2"|Y (Tyr)
-
|3 (5.26%)
+
|colspan="2"|2 (4.08%)
|colspan="2"|V (Val)
|colspan="2"|V (Val)
-
|3 (5.26%)
+
|colspan="2"|3 (6.12%)
|-
|-
|colspan="3"|'''Amino acid counting:'''
|colspan="3"|'''Amino acid counting:'''
|colspan="3"|Total number of amino acids (aa):
|colspan="3"|Total number of amino acids (aa):
-
|colspan="2"|57
+
|colspan="2"|49
|colspan="3"|Number of positively charged aa (Arg + Lys):
|colspan="3"|Number of positively charged aa (Arg + Lys):
-
|colspan="2"|5
+
|colspan="2"|4
|colspan="3"|Number of negatively charged aa (Asp + Glu):
|colspan="3"|Number of negatively charged aa (Asp + Glu):
-
|colspan="2"|6
+
|colspan="2"|4
|-
|-
|colspan="3"|'''Biochemical parameters:'''
|colspan="3"|'''Biochemical parameters:'''
|colspan="3"|Molecular weight [Da]:
|colspan="3"|Molecular weight [Da]:
-
|colspan="2"|6577.50
+
|colspan="2"|5749.62
|colspan="3"|Theoretical pI:
|colspan="3"|Theoretical pI:
-
|colspan="2"|6.28
+
|colspan="2"|6.93
|colspan="3"|Extinction coefficient:
|colspan="3"|Extinction coefficient:
|colspan="2"|?4?
|colspan="2"|?4?

Revision as of 20:59, 16 July 2013

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Sample Output

Automatically determined parameters using the [http://www.mediawiki.org/wiki/Table BioBrick-AutoAnnotator]
BioBrick: BBa_K1159000 Used open reading frame from position ?x? to ?y?.
A (Ala) 3 (6.12%) R (Arg) 2 (4.08%) N (Asn) 2 (4.08%) D (Asp) 2 (4.08%) C (Cys) 3 (6.12%)
Q (Gln) 2 (4.08%) E (Glu) 2 (4.08%) G (Gly) 4 (8.16%) H (His) 2 (4.08%) I (Ile) 2 (4.08%)
L (Leu) 2 (4.08%) K (Lys): 2 (4.08%) M (Met) 2 (4.08%) F (Phe) 6 (12.24%) P (Pro) 2 (4.08%)
S (Ser) 2 (4.08%) T (Thr) 2 (4.08%) W (Trp) 2 (4.08%) Y (Tyr) 2 (4.08%) V (Val) 3 (6.12%)
Amino acid counting: Total number of amino acids (aa): 49 Number of positively charged aa (Arg + Lys): 4 Number of negatively charged aa (Asp + Glu): 4
Biochemical parameters: Molecular weight [Da]: 5749.62 Theoretical pI: 6.93 Extinction coefficient: ?4?
Estimated half-life: Mammals: ?4 h? Yeast: ?4? E. coli: ?4?
Codon usage: Mammals: ?good? Yeast: ?Ok? E. coli: ?bad ?
RFC standard: This is a RFC 25 BioBrick, thus ATGGCCGGC and ACCGGT were added to the 5' and 3' ends.
The BioBrick-AutoAnnotator was created by TU-Munich 2013 iGEM team. For information please read the description.
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