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Team:USTC-Software/Achieve/Medal
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| + | <li><a href="#Introduction" class="button">Bronze Medal</a></li> | ||
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| + | <li><a href="#Software" class="button">Silver Medal</a></li> | ||
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| + | <li><a href="#Methodology" class="button">Gold Medal</a></br> | ||
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| + | <a href="#plus" class="button" id="subbutton">Plus</a> | ||
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<p><img src="https://static.igem.org/mediawiki/2013/7/72/USTC-Software-check_B.png" width="30" height="30" align="absmiddle" />Create and share a description of the team's project via the iGEM wiki.</p> | <p><img src="https://static.igem.org/mediawiki/2013/7/72/USTC-Software-check_B.png" width="30" height="30" align="absmiddle" />Create and share a description of the team's project via the iGEM wiki.</p> | ||
<p><img src="https://static.igem.org/mediawiki/2013/7/72/USTC-Software-check_B.png" width="30" height="30" align="absmiddle" />Present a Poster and Talk at the iGEM Jamboree.</p> | <p><img src="https://static.igem.org/mediawiki/2013/7/72/USTC-Software-check_B.png" width="30" height="30" align="absmiddle" />Present a Poster and Talk at the iGEM Jamboree.</p> | ||
| - | <p><img src="https://static.igem.org/mediawiki/2013/7/72/USTC-Software-check_B.png" width="30" height="30" align="absmiddle" />Develop and make available via the The Registry of Software Tools an open source software tool that supports synthetic biology based on BioBrick standard biological parts (remember, the iGEM judges will be looking for substantial team-based software projects).<a | + | <p><img src="https://static.igem.org/mediawiki/2013/7/72/USTC-Software-check_B.png" width="30" height="30" align="absmiddle" />Develop and make available via the The Registry of Software Tools an open source software tool that supports synthetic biology based on BioBrick standard biological parts (remember, the iGEM judges will be looking for substantial team-based software projects).<a id="out" href="https://github.com/igemsoftware/USTC-Software2013">read more</a></p> |
</div> | </div> | ||
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<div id="Software"> | <div id="Software"> | ||
<h2 align="justify"><img src="https://static.igem.org/mediawiki/2013/8/88/USTC-Software_Silver.png" width="52" height="52" align="absmiddle" />Silver Medal</h2> | <h2 align="justify"><img src="https://static.igem.org/mediawiki/2013/8/88/USTC-Software_Silver.png" width="52" height="52" align="absmiddle" />Silver Medal</h2> | ||
| - | <p align="justify"><img src="https://static.igem.org/mediawiki/2013/7/72/USTC-Software-check_B.png" width="30" height="30" align="absmiddle" />Provide a detailed, draft specification for the next version of your software tool<a | + | <p align="justify"><img src="https://static.igem.org/mediawiki/2013/7/72/USTC-Software-check_B.png" width="30" height="30" align="absmiddle" />Provide a detailed, draft specification for the next version of your software tool<a id="out" href="https://2013.igem.org/Team:USTC-Software/Project/Preview">read more</a></p> |
| - | <p><img src="https://static.igem.org/mediawiki/2013/7/72/USTC-Software-check_B.png" width="30" height="30" align="absmiddle" />Provide a second, distinct (yet complementary) software tools project.<a | + | <p><img src="https://static.igem.org/mediawiki/2013/7/72/USTC-Software-check_B.png" width="30" height="30" align="absmiddle" />Provide a second, distinct (yet complementary) software tools project.<a id="out" href="https://2013.igem.org/Team:USTC-Software/Project/App_Clotho">read more</a></p> |
<h3>Add</h3> | <h3>Add</h3> | ||
| - | <p><img src="https://static.igem.org/mediawiki/2013/7/72/USTC-Software-check_B.png" width="30" height="30" align="absmiddle" />Provide a demonstration of their software either as a textual or video tutorial made available on their wiki. This tutorial should explain all the features of the tool as well as provide sample input and output as appropriate.<a | + | <p><img src="https://static.igem.org/mediawiki/2013/7/72/USTC-Software-check_B.png" width="30" height="30" align="absmiddle" />Provide a demonstration of their software either as a textual or video tutorial made available on their wiki. This tutorial should explain all the features of the tool as well as provide sample input and output as appropriate.<a id="out" href="https://2013.igem.org/Team:USTC-Software/Project/Software#Tutorial">read more</a></p> |
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<div id="Methodology"> | <div id="Methodology"> | ||
<h2 align="left"><img src="https://static.igem.org/mediawiki/2013/d/dc/USTC_Software_Gold.png" width="52" height="52" align="absmiddle" />Gold Medal</h2> | <h2 align="left"><img src="https://static.igem.org/mediawiki/2013/d/dc/USTC_Software_Gold.png" width="52" height="52" align="absmiddle" />Gold Medal</h2> | ||
| - | <p align="left"><img src="https://static.igem.org/mediawiki/2013/7/72/USTC-Software-check_B.png" width="30" height="30" align="absmiddle" />Have another team utilize the software developed by your team. You must clearly show how your software was used and the results that were obtained.<a | + | <p align="left"><img src="https://static.igem.org/mediawiki/2013/7/72/USTC-Software-check_B.png" width="30" height="30" align="absmiddle" />Have another team utilize the software developed by your team. You must clearly show how your software was used and the results that were obtained.<a id="out" href="https://2013.igem.org/Team:USTC-Software/collaboration">read more</a></p> |
<div align="left"><br /> | <div align="left"><br /> | ||
</div> | </div> | ||
| - | <p align="left"><img src="https://static.igem.org/mediawiki/2013/7/72/USTC-Software-check_B.png" width="30" height="30" align="absmiddle" />Outline and detail how your software effects Human Practices in Synthetic Biology. Such topics include: safety, security, ethics, or ownership, sharing, and innovation.<a | + | <p align="left"><img src="https://static.igem.org/mediawiki/2013/7/72/USTC-Software-check_B.png" width="30" height="30" align="absmiddle" />Outline and detail how your software effects Human Practices in Synthetic Biology. Such topics include: safety, security, ethics, or ownership, sharing, and innovation. |
| + | <a id="out" href="https://2013.igem.org/Team:USTC-Software/Human_practice">read more</a></p> | ||
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<h3 align="left">Or</h3> | <h3 align="left">Or</h3> | ||
<p align="left"><img src="https://static.igem.org/mediawiki/2013/7/72/USTC-Software-check_B.png" width="30" height="30" align="absmiddle" />In place of requirement two, a team may instead use SBOL in your software documentation.</p> | <p align="left"><img src="https://static.igem.org/mediawiki/2013/7/72/USTC-Software-check_B.png" width="30" height="30" align="absmiddle" />In place of requirement two, a team may instead use SBOL in your software documentation.</p> | ||
| - | <p align="left" style="font-size: | + | <p align="left" style="font-size:16px;">The gene information could be output in SBOL when clicking the button “SBOL it!”. |
The file whose name is same as the name of gene containing in. | The file whose name is same as the name of gene containing in. | ||
For example: | For example: | ||
| - | This is a file named “gutM.xml”<br /><br /><img src="https://static.igem.org/mediawiki/ | + | This is a file named “gutM.xml”<br /><br /><img src="https://static.igem.org/mediawiki/igem.org/archive/2/23/20130924051624%21Starter.png"width="1000" height="436" /></p> |
| - | <h3 align="left">Plus</h3> | + | <h3 align="left" id="plus">Plus</h3> |
<h4 align="left">Develop and document a new technical standard that supports one of the following:</h4> | <h4 align="left">Develop and document a new technical standard that supports one of the following:</h4> | ||
<p align="left"><img src="https://static.igem.org/mediawiki/2013/2/28/USTC-Software-checkbn.png" width="30" height="30" align="absmiddle" />design of BioBrick Parts or Devices</p> | <p align="left"><img src="https://static.igem.org/mediawiki/2013/2/28/USTC-Software-checkbn.png" width="30" height="30" align="absmiddle" />design of BioBrick Parts or Devices</p> | ||
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<p align="left"><img src="https://static.igem.org/mediawiki/2013/2/28/USTC-Software-checkbn.png" width="30" height="30" align="absmiddle" />characterization of BioBrick Parts or Devices</p> | <p align="left"><img src="https://static.igem.org/mediawiki/2013/2/28/USTC-Software-checkbn.png" width="30" height="30" align="absmiddle" />characterization of BioBrick Parts or Devices</p> | ||
<p align="left"><img src="https://static.igem.org/mediawiki/2013/7/72/USTC-Software-check_B.png" width="30" height="30" align="absmiddle" />the analysis, modeling, and simulation of BioBrick Parts or Devices</p> | <p align="left"><img src="https://static.igem.org/mediawiki/2013/7/72/USTC-Software-check_B.png" width="30" height="30" align="absmiddle" />the analysis, modeling, and simulation of BioBrick Parts or Devices</p> | ||
| - | <p align="left" style="font-size: | + | <p align="left" style="font-size:16px;">Actually, our software could model all parts in Biobrick Parts. So we choose two parts containing promoter and protein gene of LuxR which are used more than 1000 times.<br/><br /> |
| - | Biobrick Part 1: <a href="http://parts.igem.org/Part:BBa_R0062">BBa_R0062</a> Promoter (luxR & HSL regulated -- lux pR)<br /> | + | Biobrick Part 1: <a id="content" href="http://parts.igem.org/Part:BBa_R0062">BBa_R0062</a> Promoter (luxR & HSL regulated -- lux pR)<br /> |
| - | Biobrick Part 2: <a href="http://parts.igem.org/Part:BBa_C0062">BBa_C0062</a> luxR repressor/activator, (no LVA?) <br/> | + | Biobrick Part 2: <a id="content" href="http://parts.igem.org/Part:BBa_C0062">BBa_C0062</a> luxR repressor/activator, (no LVA?) <br/> |
<br /> | <br /> | ||
Our software analyze the stability of the GRN after importing. Because those parts are multiple transcriptional regulator, the score of the stability is only two stars which means that after LuxR’s import the expression of each gene changed a lot. | Our software analyze the stability of the GRN after importing. Because those parts are multiple transcriptional regulator, the score of the stability is only two stars which means that after LuxR’s import the expression of each gene changed a lot. | ||
Latest revision as of 02:52, 28 October 2013
Bronze Medal
Register the team, have a great summer, and have fun attending the Jamboree.
Create and share a description of the team's project via the iGEM wiki.
Present a Poster and Talk at the iGEM Jamboree.
Develop and make available via the The Registry of Software Tools an open source software tool that supports synthetic biology based on BioBrick standard biological parts (remember, the iGEM judges will be looking for substantial team-based software projects).read more
Silver Medal
Provide a detailed, draft specification for the next version of your software toolread more
Provide a second, distinct (yet complementary) software tools project.read more
Add
Provide a demonstration of their software either as a textual or video tutorial made available on their wiki. This tutorial should explain all the features of the tool as well as provide sample input and output as appropriate.read more
Gold Medal
Have another team utilize the software developed by your team. You must clearly show how your software was used and the results that were obtained.read more
Outline and detail how your software effects Human Practices in Synthetic Biology. Such topics include: safety, security, ethics, or ownership, sharing, and innovation.
read more
Or
In place of requirement two, a team may instead use SBOL in your software documentation.
The gene information could be output in SBOL when clicking the button “SBOL it!”.
The file whose name is same as the name of gene containing in.
For example:
This is a file named “gutM.xml”
Plus
Develop and document a new technical standard that supports one of the following:
design of BioBrick Parts or Devices
construction of BioBrick Parts or Devices
characterization of BioBrick Parts or Devices
the analysis, modeling, and simulation of BioBrick Parts or Devices
Actually, our software could model all parts in Biobrick Parts. So we choose two parts containing promoter and protein gene of LuxR which are used more than 1000 times.
Biobrick Part 1: BBa_R0062 Promoter (luxR & HSL regulated -- lux pR)
Biobrick Part 2: BBa_C0062 luxR repressor/activator, (no LVA?)
Our software analyze the stability of the GRN after importing. Because those parts are multiple transcriptional regulator, the score of the stability is only two stars which means that after LuxR’s import the expression of each gene changed a lot.
the sharing of BioBrick Parts or Devices, either via physical DNA or as information via the internet.
Or
Build upon existing software from a previous iGEM competition found on the The Registry of Software Tools
